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The map label for this gene is yafK [H]

Identifier: 86747657

GI number: 86747657

Start: 596465

End: 597922

Strand: Reverse

Name: yafK [H]

Synonym: RPB_0531

Alternate gene names: 86747657

Gene position: 597922-596465 (Counterclockwise)

Preceding gene: 86747658

Following gene: 86747655

Centisome position: 11.21

GC content: 68.52

Gene sequence:

>1458_bases
GTGACGAGAACTCCGCTGCTGCGCGCGCTGCTGGCCTCCGCCGCGATCGCCGCGAGCGCCGTGCTGGCCGGCTGCAACAG
CGACCAGATGTCGCTCGCCCGCAACGCCAAGGCCAACCAGCCGGTGCCTCCCAAGCTGGTCGCCGCGATGCAGGACAAGA
ACATGGACCTGCAGTCGCCGATCCTGGTGCGGCTGTTCAAGCAGGAAGCCGAGCTCGAGGTCTGGAAGCAGGACCGCAGC
GGCGTCTACGCGCTGCTCAAGACCTACCCGATCTGCCGCTGGTCCGGCGATCTCGGCCCGAAGATCCGCGAGGGCGACCG
CCAGGCGCCGGAAGGGTTCTATTCGATCTCGCCCGGCCAGATGAACCCGCAATCGTCCTATTACCTGTCGTTCAACACCG
GCTATCCGAACGCCTTCGACAAGTCACTCGGCCGCACCGGCTCGCAACTGATGGTGCACGGCGACTGCTCGTCGCGCGGC
TGCTACGCGATGACCGACGAACAGATCGCCGAGATCTATGCGCTGGGGCGCGAATCGTTCTTCGGCGGCCAGCGCGCGTT
CCAGCTGCAGGCCTATCCGTTCAAAATGACGCCGGTGAACTTCGCCAAGCACCGCAACAACCCGAACATGCCGTTCTGGC
GGATGCTGAAGCAAGGCTACGACCATTTCGAGGTGACGCGGCAGGAGCCGAAGGTCGATTTCTGCGAGCAGAAATACGTG
TTCGACGCAGCACCCCCGCCGGGCGCGACCAAGCCGCTGGCGTTCAACGCCTCCGCCAAATGCCCGGCCTATACGGTGCC
GGCCGACATCGCCGACGCGGTGCGCGAGAAGGATCACAAGGACCAGACCAAGCTCGCCGAGCTGATTTCGAAGGGGACGC
CGGTGGCGCGGCTGCGCACCGGGATCGACGGCGGCATGCATCAGGTGTTCGCCTCGAAGATCCCCGACGCCTCGACCGGC
CTGTCCGAAGCCGACGACAGCTCGCCGGTGGCGCTCGCGGCATTCGACCGCGCGCCCGGCACGATCCCGCCGACCGTCAA
TCCGCCGCGGCCGTCCGACAATCTGCTGCAGAAGGCGTCCGAGACGACGGCCGTGGCCGCGACCACCGCACCGTCGACAC
CGCGCGTGGCCTCGGCGACGAAAGACGATATCGGCGGCCTGCTGTCCGGCCTGTCGCGCCGGGTCGGCAGCGGCGAGACC
ACCGCCTCGACCACACCGCCGCCGTCCTCGCCGCCGCAGGTGGTCACCGCGCGGCGCCAAGACACCATGCCCGCGCCGCC
CCGGCCGCAGGCCGCGGTGCCGAAGCCGGCAGACACCAAGCAGGCCGCCACCAAGCCCCAGCTCAAGCCCTCGGTCGACA
CCGGCGCCGCAAAGCCGGCGACGACGGCCACGATCACCGGCGCCGCGCCCGTGGTGTCGTCGAATAATTTCGACAGCCGG
TTCTCGGCGTTCCGCTGA

Upstream 100 bases:

>100_bases
CGCGTCAGAGTGACGGACTGAACTGCTCACCGATCGAGTCGCCGATCGAGCCGATCAAGATGTGGGGTGCAGGTTTGCCG
GTCGTCTGGGGAGCTTCGTT

Downstream 100 bases:

>100_bases
GGCGGCTCGCCTCGGCCGCCGCGTGGGTCGCCCACGACACCACCACCTCGTCATTCCGGGCGCCGCGCAGCGGCGAACCC
GGAATCCATACGCCGCAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MTRTPLLRALLASAAIAASAVLAGCNSDQMSLARNAKANQPVPPKLVAAMQDKNMDLQSPILVRLFKQEAELEVWKQDRS
GVYALLKTYPICRWSGDLGPKIREGDRQAPEGFYSISPGQMNPQSSYYLSFNTGYPNAFDKSLGRTGSQLMVHGDCSSRG
CYAMTDEQIAEIYALGRESFFGGQRAFQLQAYPFKMTPVNFAKHRNNPNMPFWRMLKQGYDHFEVTRQEPKVDFCEQKYV
FDAAPPPGATKPLAFNASAKCPAYTVPADIADAVREKDHKDQTKLAELISKGTPVARLRTGIDGGMHQVFASKIPDASTG
LSEADDSSPVALAAFDRAPGTIPPTVNPPRPSDNLLQKASETTAVAATTAPSTPRVASATKDDIGGLLSGLSRRVGSGET
TASTTPPPSSPPQVVTARRQDTMPAPPRPQAAVPKPADTKQAATKPQLKPSVDTGAAKPATTATITGAAPVVSSNNFDSR
FSAFR

Sequences:

>Translated_485_residues
MTRTPLLRALLASAAIAASAVLAGCNSDQMSLARNAKANQPVPPKLVAAMQDKNMDLQSPILVRLFKQEAELEVWKQDRS
GVYALLKTYPICRWSGDLGPKIREGDRQAPEGFYSISPGQMNPQSSYYLSFNTGYPNAFDKSLGRTGSQLMVHGDCSSRG
CYAMTDEQIAEIYALGRESFFGGQRAFQLQAYPFKMTPVNFAKHRNNPNMPFWRMLKQGYDHFEVTRQEPKVDFCEQKYV
FDAAPPPGATKPLAFNASAKCPAYTVPADIADAVREKDHKDQTKLAELISKGTPVARLRTGIDGGMHQVFASKIPDASTG
LSEADDSSPVALAAFDRAPGTIPPTVNPPRPSDNLLQKASETTAVAATTAPSTPRVASATKDDIGGLLSGLSRRVGSGET
TASTTPPPSSPPQVVTARRQDTMPAPPRPQAAVPKPADTKQAATKPQLKPSVDTGAAKPATTATITGAAPVVSSNNFDSR
FSAFR
>Mature_484_residues
TRTPLLRALLASAAIAASAVLAGCNSDQMSLARNAKANQPVPPKLVAAMQDKNMDLQSPILVRLFKQEAELEVWKQDRSG
VYALLKTYPICRWSGDLGPKIREGDRQAPEGFYSISPGQMNPQSSYYLSFNTGYPNAFDKSLGRTGSQLMVHGDCSSRGC
YAMTDEQIAEIYALGRESFFGGQRAFQLQAYPFKMTPVNFAKHRNNPNMPFWRMLKQGYDHFEVTRQEPKVDFCEQKYVF
DAAPPPGATKPLAFNASAKCPAYTVPADIADAVREKDHKDQTKLAELISKGTPVARLRTGIDGGMHQVFASKIPDASTGL
SEADDSSPVALAAFDRAPGTIPPTVNPPRPSDNLLQKASETTAVAATTAPSTPRVASATKDDIGGLLSGLSRRVGSGETT
ASTTPPPSSPPQVVTARRQDTMPAPPRPQAAVPKPADTKQAATKPQLKPSVDTGAAKPATTATITGAAPVVSSNNFDSRF
SAFR

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=188, Percent_Identity=43.6170212765958, Blast_Score=178, Evalue=8e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 52001; Mature: 51870

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTPLLRALLASAAIAASAVLAGCNSDQMSLARNAKANQPVPPKLVAAMQDKNMDLQSP
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCH
ILVRLFKQEAELEVWKQDRSGVYALLKTYPICRWSGDLGPKIREGDRQAPEGFYSISPGQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEECCCCC
MNPQSSYYLSFNTGYPNAFDKSLGRTGSQLMVHGDCSSRGCYAMTDEQIAEIYALGRESF
CCCCCCEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHHH
FGGQRAFQLQAYPFKMTPVNFAKHRNNPNMPFWRMLKQGYDHFEVTRQEPKVDFCEQKYV
CCCCEEEEEEECCEEECCCHHHHHCCCCCCHHHHHHHCCCCCEEECCCCCCCCHHCCCEE
FDAAPPPGATKPLAFNASAKCPAYTVPADIADAVREKDHKDQTKLAELISKGTPVARLRT
EECCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
GIDGGMHQVFASKIPDASTGLSEADDSSPVALAAFDRAPGTIPPTVNPPRPSDNLLQKAS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHC
ETTAVAATTAPSTPRVASATKDDIGGLLSGLSRRVGSGETTASTTPPPSSPPQVVTARRQ
CCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEECCC
DTMPAPPRPQAAVPKPADTKQAATKPQLKPSVDTGAAKPATTATITGAAPVVSSNNFDSR
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCHHH
FSAFR
HHCCC
>Mature Secondary Structure 
TRTPLLRALLASAAIAASAVLAGCNSDQMSLARNAKANQPVPPKLVAAMQDKNMDLQSP
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCH
ILVRLFKQEAELEVWKQDRSGVYALLKTYPICRWSGDLGPKIREGDRQAPEGFYSISPGQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEECCCCC
MNPQSSYYLSFNTGYPNAFDKSLGRTGSQLMVHGDCSSRGCYAMTDEQIAEIYALGRESF
CCCCCCEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHHH
FGGQRAFQLQAYPFKMTPVNFAKHRNNPNMPFWRMLKQGYDHFEVTRQEPKVDFCEQKYV
CCCCEEEEEEECCEEECCCHHHHHCCCCCCHHHHHHHCCCCCEEECCCCCCCCHHCCCEE
FDAAPPPGATKPLAFNASAKCPAYTVPADIADAVREKDHKDQTKLAELISKGTPVARLRT
EECCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
GIDGGMHQVFASKIPDASTGLSEADDSSPVALAAFDRAPGTIPPTVNPPRPSDNLLQKAS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHC
ETTAVAATTAPSTPRVASATKDDIGGLLSGLSRRVGSGETTASTTPPPSSPPQVVTARRQ
CCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEECCC
DTMPAPPRPQAAVPKPADTKQAATKPQLKPSVDTGAAKPATTATITGAAPVVSSNNFDSR
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCHHH
FSAFR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]