BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is phbB [H]

Identifier: 86747634

GI number: 86747634

Start: 569514

End: 570239

Strand: Reverse

Name: phbB [H]

Synonym: RPB_0508

Alternate gene names: 86747634

Gene position: 570239-569514 (Counterclockwise)

Preceding gene: 86747635

Following gene: 86747633

Centisome position: 10.7

GC content: 63.5

Gene sequence:

>726_bases
ATGGCGCGTGTGGCGTTGGTGACTGGGGGAACGCGCGGAATCGGTGCGGCAATCAGCAAGGCGTTGAAGGCGGCGGGCTA
TGCCGTCGCGGCGTCCTATGCGGGCAATGATTCTGCGGCGGAGAAGTTCAAGAGCGAGACAGGTATCCCGGTATATAAGT
GGGACGTGAGTTCGTTCGATGCCTGTGCGGCAGGCGTCAAACAGGTCGAGGCCGATCTCGGGCCGGTCGACGTTCTCGTC
AACAATGCCGGCATCACCCGCGACGGCGCGTTTCACAAGATGACGCTCGAGCAATGGAATGCGGTGATCAACACCAATCT
CGGCTCGCTGTTCAACATGACCCGGCAGGTGATCGAGGGGATGCGCGCGCGCAAGTTCGGCCGCATCGTCAACATCTCGT
CGATCAACGGCCAGAAGGGCCAGTTCGGCCAGGTCAACTACTCCGCGGCGAAGGCCGGCGACATCGGCTTCACCAAGGCG
CTGGCGCTGGAGAATGCGCGCGGCGGCATCACCGTGAACGCGATCTGCCCCGGCTACATCAACACCGAGATGGTGCAGGC
GGTGCCGAAGGACGTGCTCGACAAGGCGATCCTGCCGCTGATCCCGTGCAACCGGCTCGGCGAGGCCGAGGAGATCGCGC
GCGCCGTGGTGTTTCTCGCCGGCGACGAGTCCGGCTTCATCACCGGCTCGACACTGTCGATCAATGGCGGCCAGTTGATG
ACGTGA

Upstream 100 bases:

>100_bases
CTTGATGTTCGATCGGCGTGCGGATTTTATTCGAGACGACACAATCGAATTCTAGAAAAGCGAATTCTAGAAAAGAATGA
CTGCGGGAGGAATTTGAAAA

Downstream 100 bases:

>100_bases
CGGCGGGCTGGCTTGGCGCGGCGACGCGTTCGCGATAAGACGCGCGAACCATGACGCCGCGCACCGCCACGCTGATCGGA
CTGTCGGCCATCCTGATGTG

Product: acetoacetyl-CoA reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MARVALVTGGTRGIGAAISKALKAAGYAVAASYAGNDSAAEKFKSETGIPVYKWDVSSFDACAAGVKQVEADLGPVDVLV
NNAGITRDGAFHKMTLEQWNAVINTNLGSLFNMTRQVIEGMRARKFGRIVNISSINGQKGQFGQVNYSAAKAGDIGFTKA
LALENARGGITVNAICPGYINTEMVQAVPKDVLDKAILPLIPCNRLGEAEEIARAVVFLAGDESGFITGSTLSINGGQLM
T

Sequences:

>Translated_241_residues
MARVALVTGGTRGIGAAISKALKAAGYAVAASYAGNDSAAEKFKSETGIPVYKWDVSSFDACAAGVKQVEADLGPVDVLV
NNAGITRDGAFHKMTLEQWNAVINTNLGSLFNMTRQVIEGMRARKFGRIVNISSINGQKGQFGQVNYSAAKAGDIGFTKA
LALENARGGITVNAICPGYINTEMVQAVPKDVLDKAILPLIPCNRLGEAEEIARAVVFLAGDESGFITGSTLSINGGQLM
T
>Mature_240_residues
ARVALVTGGTRGIGAAISKALKAAGYAVAASYAGNDSAAEKFKSETGIPVYKWDVSSFDACAAGVKQVEADLGPVDVLVN
NAGITRDGAFHKMTLEQWNAVINTNLGSLFNMTRQVIEGMRARKFGRIVNISSINGQKGQFGQVNYSAAKAGDIGFTKAL
ALENARGGITVNAICPGYINTEMVQAVPKDVLDKAILPLIPCNRLGEAEEIARAVVFLAGDESGFITGSTLSINGGQLMT

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=39.6, Blast_Score=154, Evalue=8e-38,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=37.7593360995851, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI4504505, Length=208, Percent_Identity=37.0192307692308, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI7705925, Length=237, Percent_Identity=33.7552742616034, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI66933014, Length=209, Percent_Identity=32.0574162679426, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=30.7377049180328, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=31.4516129032258, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=31.7647058823529, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=30.8457711442786, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4758504, Length=248, Percent_Identity=30.241935483871, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI59889578, Length=190, Percent_Identity=32.1052631578947, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=31.5, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4503817, Length=170, Percent_Identity=34.7058823529412, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI109715829, Length=230, Percent_Identity=30, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4503301, Length=206, Percent_Identity=27.1844660194175, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=30.0411522633745, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=29.5336787564767, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=30, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI83715985, Length=249, Percent_Identity=28.1124497991968, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI210032110, Length=187, Percent_Identity=25.668449197861, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=45.0413223140496, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=34.5238095238095, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=34.4262295081967, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=35.1020408163265, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=30.8943089430894, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=31.8367346938775, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.1740890688259, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=32.7800829875519, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=29.0697674418605, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786812, Length=243, Percent_Identity=29.2181069958848, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787905, Length=239, Percent_Identity=27.1966527196653, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=32.2222222222222, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=29.8804780876494, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=240, Percent_Identity=43.75, Blast_Score=170, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI25147288, Length=243, Percent_Identity=42.798353909465, Blast_Score=166, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=34.136546184739, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=32.5301204819277, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=32, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17568967, Length=238, Percent_Identity=32.3529411764706, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=30.6451612903226, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=31.0756972111554, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=29.277566539924, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=240, Percent_Identity=31.25, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=28.8973384030418, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=28.90625, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=27.4131274131274, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=256, Percent_Identity=28.125, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=209, Percent_Identity=25.8373205741627, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=27.7566539923954, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=28.6458333333333, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=214, Percent_Identity=29.4392523364486, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=28.735632183908, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=28.957528957529, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=28.6290322580645, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=27.4131274131274, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=257, Percent_Identity=26.4591439688716, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=248, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=253, Percent_Identity=27.6679841897233, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=258, Percent_Identity=24.8062015503876, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=29.5019157088123, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=178, Percent_Identity=30.8988764044944, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=250, Percent_Identity=32.4, Blast_Score=106, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6324126, Length=184, Percent_Identity=28.2608695652174, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320089, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=38.0165289256198, Blast_Score=131, Evalue=3e-31,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=36.4754098360656, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=36.0323886639676, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=33.7349397590361, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=34.1269841269841, Blast_Score=103, Evalue=7e-23,
Organism=Drosophila melanogaster, GI21355319, Length=241, Percent_Identity=33.195020746888, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24643142, Length=237, Percent_Identity=31.2236286919831, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI18859837, Length=207, Percent_Identity=32.8502415458937, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=33.59375, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI116007236, Length=232, Percent_Identity=30.6034482758621, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24665247, Length=202, Percent_Identity=33.6633663366337, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24644337, Length=177, Percent_Identity=35.0282485875706, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221331216, Length=202, Percent_Identity=33.6633663366337, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24665243, Length=202, Percent_Identity=34.1584158415842, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI221331218, Length=202, Percent_Identity=34.1584158415842, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355631, Length=167, Percent_Identity=32.3353293413174, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641232, Length=234, Percent_Identity=30.3418803418803, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581726, Length=140, Percent_Identity=32.1428571428571, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007234, Length=234, Percent_Identity=29.4871794871795, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007238, Length=142, Percent_Identity=34.5070422535211, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28574402, Length=195, Percent_Identity=29.2307692307692, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=29.2307692307692, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=230, Percent_Identity=27.8260869565217, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641388, Length=236, Percent_Identity=28.3898305084746, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21356301, Length=189, Percent_Identity=28.042328042328, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24649181, Length=187, Percent_Identity=28.8770053475936, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=27.4193548387097, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=27.4193548387097, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24656154, Length=261, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI19922628, Length=261, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011283
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.36 [H]

Molecular weight: Translated: 25174; Mature: 25043

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVALVTGGTRGIGAAISKALKAAGYAVAASYAGNDSAAEKFKSETGIPVYKWDVSSFD
CCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCHH
ACAAGVKQVEADLGPVDVLVNNAGITRDGAFHKMTLEQWNAVINTNLGSLFNMTRQVIEG
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MRARKFGRIVNISSINGQKGQFGQVNYSAAKAGDIGFTKALALENARGGITVNAICPGYI
HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCEEEEEECCCCC
NTEMVQAVPKDVLDKAILPLIPCNRLGEAEEIARAVVFLAGDESGFITGSTLSINGGQLM
CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEEEEEECCCCCEEECCEEEECCCEEC
T
C
>Mature Secondary Structure 
ARVALVTGGTRGIGAAISKALKAAGYAVAASYAGNDSAAEKFKSETGIPVYKWDVSSFD
CEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCHH
ACAAGVKQVEADLGPVDVLVNNAGITRDGAFHKMTLEQWNAVINTNLGSLFNMTRQVIEG
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MRARKFGRIVNISSINGQKGQFGQVNYSAAKAGDIGFTKALALENARGGITVNAICPGYI
HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCEEEEEECCCCC
NTEMVQAVPKDVLDKAILPLIPCNRLGEAEEIARAVVFLAGDESGFITGSTLSINGGQLM
CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEEEEEECCCCCEEECCEEEECCCEEC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2546004; 3286259 [H]