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The map label for this gene is 86747606

Identifier: 86747606

GI number: 86747606

Start: 528382

End: 528930

Strand: Direct

Name: 86747606

Synonym: RPB_0480

Alternate gene names: NA

Gene position: 528382-528930 (Clockwise)

Preceding gene: 86747605

Following gene: 86747607

Centisome position: 9.91

GC content: 65.94

Gene sequence:

>549_bases
ATGACTGAGGCGAGCTGGACCGTGCTCCGCGAGGTGCTGGCGGAGCGCTATGACGAATTGTGCCGGCGGCTCGCTGTCCG
TCTCGGTTCGAAAGAAGCCGCGCGCGAGACCCTGCACGAAACCTGGTTGCATCTGCGCAGCGGCAACGATCCGGTCGAGG
TTCAGCGTCCGTTCGGCTATCTGCTGCGCACCGCCTTGAACCTCGCGATCAGCCGCGAGCGCACCGAGCAACGCCGCAAC
AAGCAGCTCGATGTGGTGGACATGCTCGAACTGGTCGATCCGGCGCCGGGTCCCGAGCGCGAGGCCGAGGCGCGGCGGCA
GGTCGAGTTTCTCGAACAGGTACTGCAAGAGCTGCCGCCGCGGCGCCGCGCCATCCTGCTGGCATCCCGCGTCGAGGGCG
TGCCGCTGAAGCGCATCGCCGAGCATCTCGGTCTATCGCAGCGCTTCGTCGAGATGGAATTGAAGGCGGCGCTGGAATAT
TGCGCCCGGCGGTTCGGCAAAAAGCTCACGCGGCGGTTCGGTCCGCGGTCGAAAGAAGCGTCTTCATGA

Upstream 100 bases:

>100_bases
CCGCAGCCGATTATCATCGCCATCGGCTCTCGCCCGCCGGCCGAGACCGGCGATTGCGCGCCGGAGCGGGGTGGCGCGCC
GGCGCAGGCTCGGGCGCGCC

Downstream 100 bases:

>100_bases
CATGGACGGATTTCGAGCCGCACCTTGACTTGGCGGCGTCGGTCTGCAGCTCTCTGGATCAATGATGCAATTCGACGACC
CCCCGGAGCAATTGGGCGCG

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI; RNA Polymerase ECF-Type Sigma Factor FecI; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; Extracytoplasmic Function Sigma Factor Protein; Fec I Like Protein; RNA Polymerase Sigma Factor Sigma-70 Family; FecI-Like Protein; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTEASWTVLREVLAERYDELCRRLAVRLGSKEAARETLHETWLHLRSGNDPVEVQRPFGYLLRTALNLAISRERTEQRRN
KQLDVVDMLELVDPAPGPEREAEARRQVEFLEQVLQELPPRRRAILLASRVEGVPLKRIAEHLGLSQRFVEMELKAALEY
CARRFGKKLTRRFGPRSKEASS

Sequences:

>Translated_182_residues
MTEASWTVLREVLAERYDELCRRLAVRLGSKEAARETLHETWLHLRSGNDPVEVQRPFGYLLRTALNLAISRERTEQRRN
KQLDVVDMLELVDPAPGPEREAEARRQVEFLEQVLQELPPRRRAILLASRVEGVPLKRIAEHLGLSQRFVEMELKAALEY
CARRFGKKLTRRFGPRSKEASS
>Mature_181_residues
TEASWTVLREVLAERYDELCRRLAVRLGSKEAARETLHETWLHLRSGNDPVEVQRPFGYLLRTALNLAISRERTEQRRNK
QLDVVDMLELVDPAPGPEREAEARRQVEFLEQVLQELPPRRRAILLASRVEGVPLKRIAEHLGLSQRFVEMELKAALEYC
ARRFGKKLTRRFGPRSKEASS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21127; Mature: 20995

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEASWTVLREVLAERYDELCRRLAVRLGSKEAARETLHETWLHLRSGNDPVEVQRPFGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LLRTALNLAISRERTEQRRNKQLDVVDMLELVDPAPGPEREAEARRQVEFLEQVLQELPP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
RRRAILLASRVEGVPLKRIAEHLGLSQRFVEMELKAALEYCARRFGKKLTRRFGPRSKEA
HHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SS
CC
>Mature Secondary Structure 
TEASWTVLREVLAERYDELCRRLAVRLGSKEAARETLHETWLHLRSGNDPVEVQRPFGY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LLRTALNLAISRERTEQRRNKQLDVVDMLELVDPAPGPEREAEARRQVEFLEQVLQELPP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
RRRAILLASRVEGVPLKRIAEHLGLSQRFVEMELKAALEYCARRFGKKLTRRFGPRSKEA
HHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA