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The map label for this gene is ydeP [H]

Identifier: 86747569

GI number: 86747569

Start: 487668

End: 489992

Strand: Reverse

Name: ydeP [H]

Synonym: RPB_0443

Alternate gene names: 86747569

Gene position: 489992-487668 (Counterclockwise)

Preceding gene: 86747570

Following gene: 162138524

Centisome position: 9.19

GC content: 65.38

Gene sequence:

>2325_bases
ATGGCCCAGGAAGACACTCAGGTCGACACCCGAATTCACGAAGCCGACCTCCCCGACTCCGGGCAGACCGTCGAATATGA
CGGTGCCGCCGGCGGCTGGGGCTCGCTGCAGGGCATCGCGCAGATCTTCGGCAAGGAATGGAATACGCCGACGGTGATCG
AGACGCTGATGCGCCAGAACAAGCCGAAAGGCTTCATGTGCGTGTCGTGCTCCTGGGCCAAGCCCGCCGATCACCACACC
TTCGAGTTCTGCGAGAACGGCGCCAAGGCGACGCTGTGGGAACTGACCACCAAGCGCTGCACGCCCGACTTCTTCGCCGA
GCACAGCGTCACCGAGCTGCGCAATTGGGCCGACTACGATCTCGAAATGCAGGGTCGGCTCACTTATCCGATGCGCTACG
ATTCCGCCACCGATCACTACGTCCCCTGCAGCTGGGACGAGGCGTTCCAGGGCATCGCCGAGCATCTGCGCGCGATCGAT
CCGGCATCGGCGGTGTTCTACGCGTCCGGCCGCGCCAGCCTGGAGACGTCGTATCTGTACGCGCTGTTCGCACGGCTGTA
CGGCCACAACAACCTGCCCGACAGCTCCAACATGTGCCACGAGACCACCTCGGTGGCGCTGAAGAAGCTGATCGGCGTCG
GCGTCGGCACCGTGGTGTTCGACGATCTGGCCAAATGCGACGCGATGTTCTTCTTCGGCCAGAACCCGGGCACCAACAGC
CCGCGTTTTCTGCATCCGCTGCAGGAAGCCGCCAAGCGCGGCGTGCCGATCGTCACCTTCAATCCGGTGCGCGAGCGTGC
GCTGGAGAGCTTCATCAATCCGCAGAGCCCGACCCAGATGCTGACCGGCAAAGAGACGCCGATCTCCAGCCAGTATCACC
AGCTCAGGGTCGGCGGCGACATCGCGGCGCTGACCGGGATGTGCAAGCACGTGTTCGCCGCCGACGACGCCGCCAAGGCG
CGCGGCGACAGGCGGGTGCTGGACGTCGATTTCATCGAAGCCCACACCCACGGGCTCGATGAATTCGAGGCCAAGGTCCG
CGCCACGCCGTGGCAGCAGATCGAAGCCGAATCGGGGCTGACCCGCGCGGCGATCGAACAGGCGGCCGAGGTCTATGTGA
AGGCCGAGCGCGTCATCTGCGTCTACGGCATGGGCCTGACCCAGCACGTCCACGGCTTCGACAACATCGCAATGCTGCTC
AATCTGCTGCTGCTCCGCGGCAATATCGGCCGCGAGGGCGCCGGCATCTCGCCGGTGCGCGGCCATTCCAACGTGCAGGG
CCAGCGCACCGTCGGCATTTCGGAGAAGCCGGAGCTGGTGCCGCTCGACAAGATGGCCGAGCAGTTCGGTTTCGAACCGC
CGCGTGACAAGGGCATGAACACGGTCGAGGCCTGCCACGGCCTGCTCGACGGCAAGGTGCACGCCTTCATCGGGCTCGGC
GGCAATTTCATCCGCGCCATCCCGGATCAGCCGGTGCTGGAAAAGGCCTGGTCGCGGATGCAGCTCACCGTGCAGATCGC
CACCAAGCTCAACCGCAGCCATCTGGTCCACGGCCAGTCGGCCTATCTGCTGCCGTGCCTCGGCCGCACCGAGCAGGACC
TGCAGGCGACCGGCCCTCAAGCGGTGACGATGGAAGACACGTTCAGCTGCATTCAAGGCTCGATCGGGCTGCGCACGCCG
GCGAGCGAACATCTGATGTCGGAACTCGCGATCGTCGCCGGCATCGCCAAGGCGACGCTGCCGTCGAATCCGAATGTCCG
CTGGGACGACTGGGTCGGCGATTACGGTCTGGTGCGCGGCCTGATCGAGGAGAGCTATCCGGAGATGTTCCACGACTTCA
ACGCGCGGATGTTTACGCCCGGCGGGTTCTACAAGGGCAACGACGCCCGCGAGCGGATCTGGCAGACCGAGAGCGGCAAG
GCCGAGTTCACCACCCCGCAGATGGCGAATGCGACCGGCTTCGCCGATGCGCCGGGGCGCTACCGGCTGCTGACGATGCG
TTCCAACGACCAGTTCAACACCACGATCTACGGCATGAACGACCGGCTGCGCGGCATCGAGGGCCGGCGCGACGTGCTGC
TGATCAATCCGGACGACATCGCGCGATCGGGTCTGCGCGACGGCCAGATGGTGTGGCTGCAGAGCGATGCCGAAGACGGC
CTGCATCGCGAGGTCGGCCCGCTGAAGGTGACGCCGTTCCGGCTGCCGGACGGCTGCCTCGGCGGCTATTATCCGGAGAT
GAATCCCCTGATCGCGCTGACCCATCACGACAAGGAATCCAAGACGCCGGCCAACAAGTCGGTGCCGGTGCGAATCAGGG
CGTGA

Upstream 100 bases:

>100_bases
CGCTCACATTGCGCGGAGCGGCCAAGGCCGCTCCGGAACCGTTGTGGGGACGGCCGGTTGTGTTCCGCGACGCCGCATTG
CGCGTCGCGAGGAGCGCGGC

Downstream 100 bases:

>100_bases
GTGACCGGCGGCCGGCGTGGCGCGGAAGCAAATGCAATCATCGCGGATCGCCGAGATGGATCGATTCCATCTGCGTCTTT
GCGGCATCGCAAATCATGAC

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 774; Mature: 773

Protein sequence:

>774_residues
MAQEDTQVDTRIHEADLPDSGQTVEYDGAAGGWGSLQGIAQIFGKEWNTPTVIETLMRQNKPKGFMCVSCSWAKPADHHT
FEFCENGAKATLWELTTKRCTPDFFAEHSVTELRNWADYDLEMQGRLTYPMRYDSATDHYVPCSWDEAFQGIAEHLRAID
PASAVFYASGRASLETSYLYALFARLYGHNNLPDSSNMCHETTSVALKKLIGVGVGTVVFDDLAKCDAMFFFGQNPGTNS
PRFLHPLQEAAKRGVPIVTFNPVRERALESFINPQSPTQMLTGKETPISSQYHQLRVGGDIAALTGMCKHVFAADDAAKA
RGDRRVLDVDFIEAHTHGLDEFEAKVRATPWQQIEAESGLTRAAIEQAAEVYVKAERVICVYGMGLTQHVHGFDNIAMLL
NLLLLRGNIGREGAGISPVRGHSNVQGQRTVGISEKPELVPLDKMAEQFGFEPPRDKGMNTVEACHGLLDGKVHAFIGLG
GNFIRAIPDQPVLEKAWSRMQLTVQIATKLNRSHLVHGQSAYLLPCLGRTEQDLQATGPQAVTMEDTFSCIQGSIGLRTP
ASEHLMSELAIVAGIAKATLPSNPNVRWDDWVGDYGLVRGLIEESYPEMFHDFNARMFTPGGFYKGNDARERIWQTESGK
AEFTTPQMANATGFADAPGRYRLLTMRSNDQFNTTIYGMNDRLRGIEGRRDVLLINPDDIARSGLRDGQMVWLQSDAEDG
LHREVGPLKVTPFRLPDGCLGGYYPEMNPLIALTHHDKESKTPANKSVPVRIRA

Sequences:

>Translated_774_residues
MAQEDTQVDTRIHEADLPDSGQTVEYDGAAGGWGSLQGIAQIFGKEWNTPTVIETLMRQNKPKGFMCVSCSWAKPADHHT
FEFCENGAKATLWELTTKRCTPDFFAEHSVTELRNWADYDLEMQGRLTYPMRYDSATDHYVPCSWDEAFQGIAEHLRAID
PASAVFYASGRASLETSYLYALFARLYGHNNLPDSSNMCHETTSVALKKLIGVGVGTVVFDDLAKCDAMFFFGQNPGTNS
PRFLHPLQEAAKRGVPIVTFNPVRERALESFINPQSPTQMLTGKETPISSQYHQLRVGGDIAALTGMCKHVFAADDAAKA
RGDRRVLDVDFIEAHTHGLDEFEAKVRATPWQQIEAESGLTRAAIEQAAEVYVKAERVICVYGMGLTQHVHGFDNIAMLL
NLLLLRGNIGREGAGISPVRGHSNVQGQRTVGISEKPELVPLDKMAEQFGFEPPRDKGMNTVEACHGLLDGKVHAFIGLG
GNFIRAIPDQPVLEKAWSRMQLTVQIATKLNRSHLVHGQSAYLLPCLGRTEQDLQATGPQAVTMEDTFSCIQGSIGLRTP
ASEHLMSELAIVAGIAKATLPSNPNVRWDDWVGDYGLVRGLIEESYPEMFHDFNARMFTPGGFYKGNDARERIWQTESGK
AEFTTPQMANATGFADAPGRYRLLTMRSNDQFNTTIYGMNDRLRGIEGRRDVLLINPDDIARSGLRDGQMVWLQSDAEDG
LHREVGPLKVTPFRLPDGCLGGYYPEMNPLIALTHHDKESKTPANKSVPVRIRA
>Mature_773_residues
AQEDTQVDTRIHEADLPDSGQTVEYDGAAGGWGSLQGIAQIFGKEWNTPTVIETLMRQNKPKGFMCVSCSWAKPADHHTF
EFCENGAKATLWELTTKRCTPDFFAEHSVTELRNWADYDLEMQGRLTYPMRYDSATDHYVPCSWDEAFQGIAEHLRAIDP
ASAVFYASGRASLETSYLYALFARLYGHNNLPDSSNMCHETTSVALKKLIGVGVGTVVFDDLAKCDAMFFFGQNPGTNSP
RFLHPLQEAAKRGVPIVTFNPVRERALESFINPQSPTQMLTGKETPISSQYHQLRVGGDIAALTGMCKHVFAADDAAKAR
GDRRVLDVDFIEAHTHGLDEFEAKVRATPWQQIEAESGLTRAAIEQAAEVYVKAERVICVYGMGLTQHVHGFDNIAMLLN
LLLLRGNIGREGAGISPVRGHSNVQGQRTVGISEKPELVPLDKMAEQFGFEPPRDKGMNTVEACHGLLDGKVHAFIGLGG
NFIRAIPDQPVLEKAWSRMQLTVQIATKLNRSHLVHGQSAYLLPCLGRTEQDLQATGPQAVTMEDTFSCIQGSIGLRTPA
SEHLMSELAIVAGIAKATLPSNPNVRWDDWVGDYGLVRGLIEESYPEMFHDFNARMFTPGGFYKGNDARERIWQTESGKA
EFTTPQMANATGFADAPGRYRLLTMRSNDQFNTTIYGMNDRLRGIEGRRDVLLINPDDIARSGLRDGQMVWLQSDAEDGL
HREVGPLKVTPFRLPDGCLGGYYPEMNPLIALTHHDKESKTPANKSVPVRIRA

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=755, Percent_Identity=45.5629139072848, Blast_Score=666, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=396, Percent_Identity=27.020202020202, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 85693; Mature: 85562

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQEDTQVDTRIHEADLPDSGQTVEYDGAAGGWGSLQGIAQIFGKEWNTPTVIETLMRQN
CCCCCCCHHHEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCC
KPKGFMCVSCSWAKPADHHTFEFCENGAKATLWELTTKRCTPDFFAEHSVTELRNWADYD
CCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEEHHHHHCCCHHHHHHCCHHHHHCCCCCC
LEMQGRLTYPMRYDSATDHYVPCSWDEAFQGIAEHLRAIDPASAVFYASGRASLETSYLY
EEECCEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
ALFARLYGHNNLPDSSNMCHETTSVALKKLIGVGVGTVVFDDLAKCDAMFFFGQNPGTNS
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCEEEEECCCCCCCC
PRFLHPLQEAAKRGVPIVTFNPVRERALESFINPQSPTQMLTGKETPISSQYHQLRVGGD
CHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCC
IAALTGMCKHVFAADDAAKARGDRRVLDVDFIEAHTHGLDEFEAKVRATPWQQIEAESGL
HHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEHHHHHCCCHHHHHHHCCCCHHHHHHHCCC
TRAAIEQAAEVYVKAERVICVYGMGLTQHVHGFDNIAMLLNLLLLRGNIGREGAGISPVR
HHHHHHHHHHHHHEECEEEEEECCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GHSNVQGQRTVGISEKPELVPLDKMAEQFGFEPPRDKGMNTVEACHGLLDGKVHAFIGLG
CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCEEEEEECC
GNFIRAIPDQPVLEKAWSRMQLTVQIATKLNRSHLVHGQSAYLLPCLGRTEQDLQATGPQ
CCCEECCCCCHHHHHHHHHEEEEEEEHHHCCHHHEECCCCCEEEECCCCCCHHHHHCCCC
AVTMEDTFSCIQGSIGLRTPASEHLMSELAIVAGIAKATLPSNPNVRWDDWVGDYGLVRG
EEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHH
LIEESYPEMFHDFNARMFTPGGFYKGNDARERIWQTESGKAEFTTPQMANATGFADAPGR
HHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC
YRLLTMRSNDQFNTTIYGMNDRLRGIEGRRDVLLINPDDIARSGLRDGQMVWLQSDAEDG
EEEEEEECCCCCCEEEEECCCHHCCCCCCCCEEEECCHHHHHCCCCCCCEEEEECCCCCC
LHREVGPLKVTPFRLPDGCLGGYYPEMNPLIALTHHDKESKTPANKSVPVRIRA
CHHCCCCEEEECEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
AQEDTQVDTRIHEADLPDSGQTVEYDGAAGGWGSLQGIAQIFGKEWNTPTVIETLMRQN
CCCCCCHHHEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCC
KPKGFMCVSCSWAKPADHHTFEFCENGAKATLWELTTKRCTPDFFAEHSVTELRNWADYD
CCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEEHHHHHCCCHHHHHHCCHHHHHCCCCCC
LEMQGRLTYPMRYDSATDHYVPCSWDEAFQGIAEHLRAIDPASAVFYASGRASLETSYLY
EEECCEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
ALFARLYGHNNLPDSSNMCHETTSVALKKLIGVGVGTVVFDDLAKCDAMFFFGQNPGTNS
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCEEEEECCCCCCCC
PRFLHPLQEAAKRGVPIVTFNPVRERALESFINPQSPTQMLTGKETPISSQYHQLRVGGD
CHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCC
IAALTGMCKHVFAADDAAKARGDRRVLDVDFIEAHTHGLDEFEAKVRATPWQQIEAESGL
HHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEHHHHHCCCHHHHHHHCCCCHHHHHHHCCC
TRAAIEQAAEVYVKAERVICVYGMGLTQHVHGFDNIAMLLNLLLLRGNIGREGAGISPVR
HHHHHHHHHHHHHEECEEEEEECCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GHSNVQGQRTVGISEKPELVPLDKMAEQFGFEPPRDKGMNTVEACHGLLDGKVHAFIGLG
CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCEEEEEECC
GNFIRAIPDQPVLEKAWSRMQLTVQIATKLNRSHLVHGQSAYLLPCLGRTEQDLQATGPQ
CCCEECCCCCHHHHHHHHHEEEEEEEHHHCCHHHEECCCCCEEEECCCCCCHHHHHCCCC
AVTMEDTFSCIQGSIGLRTPASEHLMSELAIVAGIAKATLPSNPNVRWDDWVGDYGLVRG
EEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHH
LIEESYPEMFHDFNARMFTPGGFYKGNDARERIWQTESGKAEFTTPQMANATGFADAPGR
HHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC
YRLLTMRSNDQFNTTIYGMNDRLRGIEGRRDVLLINPDDIARSGLRDGQMVWLQSDAEDG
EEEEEEECCCCCCEEEEECCCHHCCCCCCCCEEEECCHHHHHCCCCCCCEEEEECCCCCC
LHREVGPLKVTPFRLPDGCLGGYYPEMNPLIALTHHDKESKTPANKSVPVRIRA
CHHCCCCEEEECEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]