| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is ygfF [H]
Identifier: 86747401
GI number: 86747401
Start: 309947
End: 310693
Strand: Reverse
Name: ygfF [H]
Synonym: RPB_0275
Alternate gene names: 86747401
Gene position: 310693-309947 (Counterclockwise)
Preceding gene: 86747402
Following gene: 86747400
Centisome position: 5.83
GC content: 68.41
Gene sequence:
>747_bases ATGAACGACCGCGTCGTCGTCATCACCGGAGGCAGCCGCGGCATCGGCCGCGCCACCGCGCTCGCCGCTGCGGCCCGCGG CTTCAAGGTCGTGGTCGGCTACGCCAGCAATGCGGAGGCGGCGCAGGAGACCGTGTCGGCGATCGAGGCCAGCAACGGCC GGGCGATCGCGGTGAAATGCGACGTCGGCGACGAGGCGGATATCATTGCTTTGTTCGAGGCCGCCGACAAATTCGGGACG CTCGGCGCGCTGGTCAACAATGCCGGCATCGTCGGCCCGACCGCGCGGGTCGACGAGATGTCGGCGGAGCGCATCCAGCG GATGATGGCGGTCAACGTCACGGGCAGCATCCTGTGCGCGCGCGAGGCGGTGAAGCGGTTGTCGACCCGGCACGGCGGCC CCGGCGGCGTGATCATCAATCTGTCGTCGGTCGCAGCCAAACTCGGATCGCCGAATACTTACGTTGACTACGCCGCTTCC AAGGGCGCGATCGATTCCTTCACTATCGGGCTCGGCCATGAGGTCGCCGGCGAAGGCATTCGCGTCGCCGCGATCCGCCC CGGCCTGATCGACACCGAGATCCACGCCTCCGGCGGCGATCCGGACCGCGCCCACCGGCTCAGCGGCCATGTGCCGATGC AGCGCGTCGGCCGCGCCGAGGAAATCGCCAACGCCGTGGTCTGGCTGATGTCGGACGAAGCCTCCTACGTCACCAGCGCC ATCATCGATGTCTCGGGCGGACGATAG
Upstream 100 bases:
>100_bases CTCTACATCATCGAGATTCCGTTCGCCCGCAGCATCGCCTGGTTGGTGTCGCTGCTGGCGCTGATCGCGATGCTGATCCG GCTGCTGTCGTGAGGTGCGC
Downstream 100 bases:
>100_bases TCCACCCTGCGCCAACTACAGGACTTCCCTATGGCCAACTACGATCTCGTCATCATCGGCACCGGCCCCGGCGGCTATGT CTGTGCGATCCGCGCGGCGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MNDRVVVITGGSRGIGRATALAAAARGFKVVVGYASNAEAAQETVSAIEASNGRAIAVKCDVGDEADIIALFEAADKFGT LGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCAREAVKRLSTRHGGPGGVIINLSSVAAKLGSPNTYVDYAAS KGAIDSFTIGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPDRAHRLSGHVPMQRVGRAEEIANAVVWLMSDEASYVTSA IIDVSGGR
Sequences:
>Translated_248_residues MNDRVVVITGGSRGIGRATALAAAARGFKVVVGYASNAEAAQETVSAIEASNGRAIAVKCDVGDEADIIALFEAADKFGT LGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCAREAVKRLSTRHGGPGGVIINLSSVAAKLGSPNTYVDYAAS KGAIDSFTIGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPDRAHRLSGHVPMQRVGRAEEIANAVVWLMSDEASYVTSA IIDVSGGR >Mature_248_residues MNDRVVVITGGSRGIGRATALAAAARGFKVVVGYASNAEAAQETVSAIEASNGRAIAVKCDVGDEADIIALFEAADKFGT LGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCAREAVKRLSTRHGGPGGVIINLSSVAAKLGSPNTYVDYAAS KGAIDSFTIGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPDRAHRLSGHVPMQRVGRAEEIANAVVWLMSDEASYVTSA IIDVSGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=33.739837398374, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI59889578, Length=208, Percent_Identity=33.6538461538462, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=27.3076923076923, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI109715829, Length=240, Percent_Identity=30, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI31542939, Length=260, Percent_Identity=28.0769230769231, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=30.4, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=28.968253968254, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI40254986, Length=249, Percent_Identity=30.5220883534137, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=29.5275590551181, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=31.3725490196078, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI4503301, Length=211, Percent_Identity=27.4881516587678, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI209862901, Length=204, Percent_Identity=30.8823529411765, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI19923983, Length=204, Percent_Identity=30.8823529411765, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=54.6938775510204, Blast_Score=281, Evalue=4e-77, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=35.0597609561753, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=37.6518218623482, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.8367346938775, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=34.2741935483871, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=32.0158102766798, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=30.6772908366534, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.1967213114754, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=30.1960784313725, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1789057, Length=263, Percent_Identity=30.7984790874525, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=29.4354838709677, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=28.1746031746032, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787526, Length=257, Percent_Identity=26.4591439688716, Blast_Score=69, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.4262295081967, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=31.8548387096774, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=34.2741935483871, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=32.9411764705882, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=32.046332046332, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=31.0344827586207, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=29.9242424242424, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=30.4, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=30.7984790874525, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=30.8270676691729, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562904, Length=253, Percent_Identity=28.8537549407115, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=28.3582089552239, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=29.8850574712644, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17563726, Length=249, Percent_Identity=29.3172690763052, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.2238805970149, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=27.2388059701493, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=28.6259541984733, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=30.5343511450382, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=30.4182509505703, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=28.2442748091603, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=27.7153558052434, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=29.6875, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=28.7937743190661, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=29.6153846153846, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=29.5719844357977, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=29.2307692307692, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=30.6122448979592, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=30.0518134715026, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI72001658, Length=216, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=30.9644670050761, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6323882, Length=242, Percent_Identity=29.3388429752066, Blast_Score=81, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=253, Percent_Identity=29.6442687747036, Blast_Score=73, Evalue=5e-14, Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=34.6153846153846, Blast_Score=113, Evalue=9e-26, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=32.421875, Blast_Score=109, Evalue=1e-24, Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=33.59375, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=33.469387755102, Blast_Score=103, Evalue=7e-23, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=33.203125, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=33.6633663366337, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=31.496062992126, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24648693, Length=248, Percent_Identity=31.4516129032258, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI21355889, Length=248, Percent_Identity=31.4516129032258, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=28.3400809716599, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI17737361, Length=239, Percent_Identity=30.9623430962343, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24641388, Length=242, Percent_Identity=33.4710743801653, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24663911, Length=238, Percent_Identity=27.3109243697479, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI24644337, Length=176, Percent_Identity=32.3863636363636, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI28571387, Length=239, Percent_Identity=31.3807531380753, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007236, Length=239, Percent_Identity=28.4518828451883, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI116007234, Length=205, Percent_Identity=30.2439024390244, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI281364494, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281364892, Length=196, Percent_Identity=31.6326530612245, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24648944, Length=200, Percent_Identity=29.5, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI161076933, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24584748, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21357673, Length=210, Percent_Identity=32.3809523809524, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25436; Mature: 25436
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDRVVVITGGSRGIGRATALAAAARGFKVVVGYASNAEAAQETVSAIEASNGRAIAVKC CCCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE DVGDEADIIALFEAADKFGTLGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCA CCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH REAVKRLSTRHGGPGGVIINLSSVAAKLGSPNTYVDYAASKGAIDSFTIGLGHEVAGEGI HHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHCCCCE RVAAIRPGLIDTEIHASGGDPDRAHRLSGHVPMQRVGRAEEIANAVVWLMSDEASYVTSA EEEEECCCCEEEEEECCCCCHHHHHHCCCCCCHHHCCCHHHHHHEEEEEECCCHHHHEEE IIDVSGGR EEEECCCC >Mature Secondary Structure MNDRVVVITGGSRGIGRATALAAAARGFKVVVGYASNAEAAQETVSAIEASNGRAIAVKC CCCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE DVGDEADIIALFEAADKFGTLGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCA CCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH REAVKRLSTRHGGPGGVIINLSSVAAKLGSPNTYVDYAASKGAIDSFTIGLGHEVAGEGI HHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHCCCCE RVAAIRPGLIDTEIHASGGDPDRAHRLSGHVPMQRVGRAEEIANAVVWLMSDEASYVTSA EEEEECCCCEEEEEECCCCCHHHHHHCCCCCCHHHCCCHHHHHHEEEEEECCCHHHHEEE IIDVSGGR EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]