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The map label for this gene is regA [H]

Identifier: 86747362

GI number: 86747362

Start: 269680

End: 270213

Strand: Reverse

Name: regA [H]

Synonym: RPB_0236

Alternate gene names: 86747362

Gene position: 270213-269680 (Counterclockwise)

Preceding gene: 86747363

Following gene: 86747360

Centisome position: 5.07

GC content: 65.36

Gene sequence:

>534_bases
TTGATTGAAGAACGCTCCTTGATCGTCGTCGAGGACGACGCCGGATTCGCCCGCACGCTGAAGCGCTCGTTCGAGCGTCG
CGGCTACGAGGTGGTGCACGCCTCGACCATCGACGAGGTGCGCGACGCGCTGGACGAGCGTTCGTTCGGCTACGCCGTGG
TCGACCTCAAACTCGGCGGCGCCTCGGGGCTCGCCTGCGTCGAACTGCTGCACGCCCAGGACCCGGAGATGCTGATCGTC
GTTCTGACCGGCTTCGCCAGCATCGCCACCGCGGTCGAGGCGATCAAGCTCGGCGCCTGTCACTACCTCGCCAAGCCGTC
GAACACCGACGACATCGAGGCGGCGTTCCGCAAGGCGGAGGGCAATGCCGACATTGCGCTGGCGAGCCAGCCGACCTCGA
TCAAGACGCTGGAATGGGAACGCATCCATCAAACGCTGATCGAGAGCGAATTCAACATTTCCGAGGCTGCGCGGCGGCTC
GGCATGCATCGCCGGACCCTGGCGCGCAAGCTCGAAAAGCGGCAGGTCAGGTAG

Upstream 100 bases:

>100_bases
CGCAAGCTCGGCGGCTCGATCACCGCGGAAAACCTCCGCACCCGCGGCGCCAAGGTCAAGCTGGTGCTGCCGCTTTCGAC
ACTCGCGATCGGAAATCCAT

Downstream 100 bases:

>100_bases
GCGCAGCGTCCCGGCCCGAGCCCTCAGGCCGTCCGGGCGCTGCCCGCAATGGTCGTGGGCGCCGCGCCGGTCTCATCGAC
ATGCGCCAGCGCGCTGAGGT

Product: two component Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MIEERSLIVVEDDAGFARTLKRSFERRGYEVVHASTIDEVRDALDERSFGYAVVDLKLGGASGLACVELLHAQDPEMLIV
VLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFRKAEGNADIALASQPTSIKTLEWERIHQTLIESEFNISEAARRL
GMHRRTLARKLEKRQVR

Sequences:

>Translated_177_residues
MIEERSLIVVEDDAGFARTLKRSFERRGYEVVHASTIDEVRDALDERSFGYAVVDLKLGGASGLACVELLHAQDPEMLIV
VLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFRKAEGNADIALASQPTSIKTLEWERIHQTLIESEFNISEAARRL
GMHRRTLARKLEKRQVR
>Mature_177_residues
MIEERSLIVVEDDAGFARTLKRSFERRGYEVVHASTIDEVRDALDERSFGYAVVDLKLGGASGLACVELLHAQDPEMLIV
VLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFRKAEGNADIALASQPTSIKTLEWERIHQTLIESEFNISEAARRL
GMHRRTLARKLEKRQVR

Specific function: Member of the two-component regulatory system regB/regA. Involved in transactivating anaerobic expression of the photosynthetic apparatus. It is a transcriptional regulator that is responsible for activating expression of the puf, puh, and puc operons in

COG id: COG4567

COG function: function code TK; Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=113, Percent_Identity=30.0884955752212, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR002197
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 19666; Mature: 19666

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEERSLIVVEDDAGFARTLKRSFERRGYEVVHASTIDEVRDALDERSFGYAVVDLKLGG
CCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEEECC
ASGLACVELLHAQDPEMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFRKAE
CCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCC
GNADIALASQPTSIKTLEWERIHQTLIESEFNISEAARRLGMHRRTLARKLEKRQVR
CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEERSLIVVEDDAGFARTLKRSFERRGYEVVHASTIDEVRDALDERSFGYAVVDLKLGG
CCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEEECC
ASGLACVELLHAQDPEMLIVVLTGFASIATAVEAIKLGACHYLAKPSNTDDIEAAFRKAE
CCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCC
GNADIALASQPTSIKTLEWERIHQTLIESEFNISEAARRLGMHRRTLARKLEKRQVR
CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA