Click here to switch to the map view.

The map label for this gene is yliC [C]

Identifier: 86747357

GI number: 86747357

Start: 263844

End: 264800

Strand: Reverse

Name: yliC [C]

Synonym: RPB_0231

Alternate gene names: 86747357

Gene position: 264800-263844 (Counterclockwise)

Preceding gene: 86747358

Following gene: 86747356

Centisome position: 4.97

GC content: 65.62

Gene sequence:

>957_bases
ATGTTGAACGCTGCACGTCTTCACATCGTCGGACGCCGGGTGCTGCAGGCGATCCCGGTGGTGGTGTTGTCCACCTTCAT
CGTGTTCGGCCTGCTCAAGCTGGTGCCCGGCGACGTCGCGGTGACGCTCGCGGGCGACAACGCCTCGGACCAGCGGATCG
CCGAGATTCGCGAACTCTATGGCCTCAACCAGCCGTTCCTGCTGCAATACGGTTCGTGGCTGGCGAAGGCGGTGCAGGGC
GATCTGTCGAACTCGCTGGTGTCGAATGAAGCGGTGCTGACCTCGATCCAGCGCTGCCTGCCGCATACGCTGCTGATCGT
GACGCTGGCCCTGCTCACCGCCCTGCTGATCGGCGTGCCGCTGGGTATCGCCGCGGCGACCAAGCCGGGGTCGTGGATCG
ACAGCGTGGTGATGGCGATCGCATCGCTCGGCGTCGCCGTGCCGAATTTCTGGCTCGGCATGTTGCTGGTGGCGTTCTTC
TCGCTGCAGCTCAACTGGCTGCCGGCGACCGGCGCGGTCGCGTTCACGAAAGATCCGTGGGCGTCGCTCAGCCACGCCAT
CCTGCCGGCGGTCGCCTTGGCCTCGGGCGGCATCGCCGAAGTGGCGCGGCAGCTCCGCTCGTCACTGGTGGAAATCCTGT
CGTCGCAGCAGGTCCGGACGCTGCACGCCAAGGGCCTGCCGCCGTCGTCGATCCTGTGGCGTCACGGGCTGAAGAACGTC
AGCGTCAATCTGCTCACCGTGATCAGCCTGCTGGCGAACCGGATGCTGGCGGCCACCGTGGTGGTCGAGGCGGTGTTCGC
GATTCCCGGCATGGGCGGTCTGATCGTCAACGCCGCGATGCATCGCGATTTCCCGGTGGTGCAGGGCGTGGTGTTCACCA
TGGTGCTGATCGTGGTGTCGCTCAATCTCTTGACCGACATCCTCTACAGCGTTCTCGATCCGAGGATCGCGGCATGA

Upstream 100 bases:

>100_bases
CAAGCCCAATCTGCTCGGCAAGCCGAAGTTCGAATACATCTCCCTCGCGTGAGTGAACGGCGCCGCATGGTTTGCGGCGC
CCGTTCCGGATCGGGTCCTC

Downstream 100 bases:

>100_bases
CCGATGTGGCGATGACGGCAATGGCGCATCGGCCGCGACGGATGCGGCGTTTCGTGCGGTGGTTCGTCTCCGACATCCGC
GGCGCGGTCAGTCTGACGTT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLNAARLHIVGRRVLQAIPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASDQRIAEIRELYGLNQPFLLQYGSWLAKAVQG
DLSNSLVSNEAVLTSIQRCLPHTLLIVTLALLTALLIGVPLGIAAATKPGSWIDSVVMAIASLGVAVPNFWLGMLLVAFF
SLQLNWLPATGAVAFTKDPWASLSHAILPAVALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNV
SVNLLTVISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVSLNLLTDILYSVLDPRIAA

Sequences:

>Translated_318_residues
MLNAARLHIVGRRVLQAIPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASDQRIAEIRELYGLNQPFLLQYGSWLAKAVQG
DLSNSLVSNEAVLTSIQRCLPHTLLIVTLALLTALLIGVPLGIAAATKPGSWIDSVVMAIASLGVAVPNFWLGMLLVAFF
SLQLNWLPATGAVAFTKDPWASLSHAILPAVALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNV
SVNLLTVISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVSLNLLTDILYSVLDPRIAA
>Mature_318_residues
MLNAARLHIVGRRVLQAIPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASDQRIAEIRELYGLNQPFLLQYGSWLAKAVQG
DLSNSLVSNEAVLTSIQRCLPHTLLIVTLALLTALLIGVPLGIAAATKPGSWIDSVVMAIASLGVAVPNFWLGMLLVAFF
SLQLNWLPATGAVAFTKDPWASLSHAILPAVALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNV
SVNLLTVISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVSLNLLTDILYSVLDPRIAA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=36.1290322580645, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789888, Length=313, Percent_Identity=38.3386581469649, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=32.0359281437126, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=32.8025477707006, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=36.0606060606061, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788504, Length=286, Percent_Identity=31.1188811188811, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=29.0566037735849, Blast_Score=124, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33715; Mature: 33715

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAARLHIVGRRVLQAIPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASDQRIAEIRELY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
GLNQPFLLQYGSWLAKAVQGDLSNSLVSNEAVLTSIQRCLPHTLLIVTLALLTALLIGVP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGIAAATKPGSWIDSVVMAIASLGVAVPNFWLGMLLVAFFSLQLNWLPATGAVAFTKDPW
CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEECCCCH
ASLSHAILPAVALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCCCC
SVNLLTVISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LNLLTDILYSVLDPRIAA
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLNAARLHIVGRRVLQAIPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASDQRIAEIRELY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
GLNQPFLLQYGSWLAKAVQGDLSNSLVSNEAVLTSIQRCLPHTLLIVTLALLTALLIGVP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGIAAATKPGSWIDSVVMAIASLGVAVPNFWLGMLLVAFFSLQLNWLPATGAVAFTKDPW
CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEECCCCH
ASLSHAILPAVALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCCCC
SVNLLTVISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LNLLTDILYSVLDPRIAA
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]