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The map label for this gene is ybbB [H]

Identifier: 86747307

GI number: 86747307

Start: 196286

End: 196957

Strand: Reverse

Name: ybbB [H]

Synonym: RPB_0180

Alternate gene names: 86747307

Gene position: 196957-196286 (Counterclockwise)

Preceding gene: 86747312

Following gene: 86747306

Centisome position: 3.69

GC content: 65.92

Gene sequence:

>672_bases
ATGCAGCGCCTCACGACGAGCGGAGATCGGCCGAGCACGGCGAGGGCGTTTGTGTACCTGACGCAAATCCTTCAGAAGGC
CGCCGAAACGGTCGAGCGCGACCCGGCCCTCGCGCGGTGTTGCATCGAACGTGCCGTGGCGTTGCTTCGGGACGTGCAGG
CGCGACACGAACTGATCGACGAAGTGCCTCCCGAGACGCTCGACCATCCCGGCCTGGCGCGCTGGCAATTGAACCGGGTG
GTCGCGCATGTCGAGCAGAACATCGACCGCAGCCTGCGGATCAGGGATCTGGCCCAGCTCATCGATCTCAGTGCCAGCCA
CTTTGCGCGGGTATTCCGTCGGAGTGTCGGCGTTGCGCCTCGCAACTTCGTGCTGGAGCGCCGGGTCGCGCGGGCCAAGT
TATTGATGCAGACCTCCGAATTGCCGCTGTCGGAAGTCGCGCTGGCCTGCGGGCTGAGCGACCAGGCTCATCTCTCCCGA
ATATTCCGGCGCTTCACCGGCATGCCGCCGAACGCCTGGCGGCGCCAGCGGCGAGATCGCGAGTCTCAAGACGATGGAGA
GCTGGCTTCGAAGCCGATCAGCAGGGCGGTGGCCGACTCACAGCCGTCGCGGACGACCCGGTTCAACCGAAGTACCGGAG
CCGAGCGCGCGGCCACCTCGAAACTCGCTTAA

Upstream 100 bases:

>100_bases
GTTGGTCGGACTATCGGACGGCGACCGAGGCATAGTCTGGTGTCGCTCCATGGCAATGGTCCGCGTGTATACGATATTCG
GGGATGAGGAGTTCAGGCCG

Downstream 100 bases:

>100_bases
ACGAGGTTAAGACTTGATGAATGCGAGCCGGTCGGTGTCGAGCACGTCGGTGTTGACCTTATCGGCGTGCGTGGCCGCTG
CCTATCGCCCCCTCACGACC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQRLTTSGDRPSTARAFVYLTQILQKAAETVERDPALARCCIERAVALLRDVQARHELIDEVPPETLDHPGLARWQLNRV
VAHVEQNIDRSLRIRDLAQLIDLSASHFARVFRRSVGVAPRNFVLERRVARAKLLMQTSELPLSEVALACGLSDQAHLSR
IFRRFTGMPPNAWRRQRRDRESQDDGELASKPISRAVADSQPSRTTRFNRSTGAERAATSKLA

Sequences:

>Translated_223_residues
MQRLTTSGDRPSTARAFVYLTQILQKAAETVERDPALARCCIERAVALLRDVQARHELIDEVPPETLDHPGLARWQLNRV
VAHVEQNIDRSLRIRDLAQLIDLSASHFARVFRRSVGVAPRNFVLERRVARAKLLMQTSELPLSEVALACGLSDQAHLSR
IFRRFTGMPPNAWRRQRRDRESQDDGELASKPISRAVADSQPSRTTRFNRSTGAERAATSKLA
>Mature_223_residues
MQRLTTSGDRPSTARAFVYLTQILQKAAETVERDPALARCCIERAVALLRDVQARHELIDEVPPETLDHPGLARWQLNRV
VAHVEQNIDRSLRIRDLAQLIDLSASHFARVFRRSVGVAPRNFVLERRVARAKLLMQTSELPLSEVALACGLSDQAHLSR
IFRRFTGMPPNAWRRQRRDRESQDDGELASKPISRAVADSQPSRTTRFNRSTGAERAATSKLA

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=86, Percent_Identity=32.5581395348837, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 25182; Mature: 25182

Theoretical pI: Translated: 11.46; Mature: 11.46

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLTTSGDRPSTARAFVYLTQILQKAAETVERDPALARCCIERAVALLRDVQARHELID
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EVPPETLDHPGLARWQLNRVVAHVEQNIDRSLRIRDLAQLIDLSASHFARVFRRSVGVAP
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCH
RNFVLERRVARAKLLMQTSELPLSEVALACGLSDQAHLSRIFRRFTGMPPNAWRRQRRDR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCC
ESQDDGELASKPISRAVADSQPSRTTRFNRSTGAERAATSKLA
CCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MQRLTTSGDRPSTARAFVYLTQILQKAAETVERDPALARCCIERAVALLRDVQARHELID
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EVPPETLDHPGLARWQLNRVVAHVEQNIDRSLRIRDLAQLIDLSASHFARVFRRSVGVAP
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCH
RNFVLERRVARAKLLMQTSELPLSEVALACGLSDQAHLSRIFRRFTGMPPNAWRRQRRDR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCC
ESQDDGELASKPISRAVADSQPSRTTRFNRSTGAERAATSKLA
CCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]