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The map label for this gene is yliB [C]

Identifier: 86747259

GI number: 86747259

Start: 142384

End: 143982

Strand: Reverse

Name: yliB [C]

Synonym: RPB_0132

Alternate gene names: 86747259

Gene position: 143982-142384 (Counterclockwise)

Preceding gene: 86747260

Following gene: 86747258

Centisome position: 2.7

GC content: 64.85

Gene sequence:

>1599_bases
ATGAAGTTGACGAAGCGGTCCTTTGTTATCGGCTCCCTCGGAGGCCTGGCGATGCTCGGCCTGCCGGCCGATCTGCGCGC
GCAGCAGGCCGGCGGCGGCACGTTGGTGATCGGCTCGACGCAGGTGCCGCGGCACTTCAACGGCGCGGTGCAGTCGGGCA
TCGCCACCGCGCTGCCGAGCACGCAGATTTTCGCCAGCCCGCTGCGCTTCGACGAGAACTGGAATCCGCAGCCGTATCTC
GCCAAATCCTGGGAGGTCGCGCCCGACGGTCTGTCGATTACCCTGAAGCTGGTCGACGACGCGGTGTTTCACGACGGCAA
GCCGGTGACCTCCGAGGACGTCGCGTTCTCGATCATGACGATCAAGGCCAACCACCCGTTCAAGACCATGCTGGCCGCGG
TCGACAAGGTGGAGACGCCCGATCCGAAGACCGCGGTGATCAAGCTGGCGCATCCGCATCCGGCGCTGCTGCTGGCGATG
TCGCCGGCGCTGATGCCGATCCTGCCGAAGCACGTCTACGGCGACGGCCAGGACGTCAAGGCGCATCCGGCCAACCTCAA
GCCGATCGGTTCCGGCCCGTACAAGCTCGCCGAATACAAGCAGGGCGAGTACTACACGCTGGAGAAGTTCGACAAATTCT
TCATCCCGGGCCGTCCGAAGCTCGACAAGATCGTGGTGCGGCTGATCTCGGATCCGAACGCGCTGATGGTCTCGGCCGAG
CGCGGCGAGGTCCACGCCGTGCCGTTCGTCACCGGCGTGCGCGACATCGACCGGCTGGAGAAGTCGAAGAACCTCAAGGT
CGTCGACAAGGGCTTCGCCGGTCTCGGCGCGCTGAACTGGCTCGCCTTCAACACCAAGAAGAAGCCGCTCGACGACGTCC
GCGTCCGCCAGGCGATCGCCTACGCGGCCAATCGCGACTTCATCGTCAACAAGCTGATGGGCGGCAAGGCGATGCCGTCG
ACTGGGCCGATCGCGCCGGGCTCGCCGTTCGAGGAGAAGAACGTCCAGCTCTACAAGTTCGACGTCGCCAAGGCCAAAAA
GCTGCTCGACGAGGCCGGCCTCAAGCCGGACGGCAACGGCGTCCGCGCCACGCTGACGATCGACTACCTCCCGGGCAGCG
ACGAGCAGCAGCGCAACGTCGCCGAATACATGCGCTCGGCGCTGAAGCGTGTCGGCCTGAACCTCGAAGTCCGCGCCGCG
CCCGACTTCCCGACCTGGGCGCAGCGGGTCTCGAACTTCGACTTCGATCTGACCATGGACTCGGTCTACAATTGGGCCGA
TCCGGTGATCGGCGTCGACCGGACCTATCTGACCTCGAATATCCGCAAGGGCATCATCTGGTCGAACACGCAGCAATATT
CCAACCCGAAGGTCGACGAGATCCTCGGCAAGGCCGCTGTGGAGACCTCGGCGGAGAAGCGCAAGGCGCTTTATTCGGAG
TTCCAGAAGATCGTCGTCGACGAGGTGCCGGTGTTCTTCATCAACGCCGTGCCGTTCCACAACGCCTTCGCCAACGGCCT
CGGCGGGCTGCCGACCACGATCTGGGGCGTCGTCTCGCCGCTCGACGAAGTGCACTGGGTCACGCCGCCGAAGACCTGA

Upstream 100 bases:

>100_bases
CGGAGCCTCGTCATGAGCGCCGGTCTCGTCGTTTTGCCGATACGCACGCCGTGCGCATCGATCATCCTCGCCCTCGAACC
TTCACAGCGGAGTTGAATCC

Downstream 100 bases:

>100_bases
ACCCAACCGGGTAGACAGACAGCACCATGACGCTCCTCACCCATCTGTTCGGAAAACTCGCCAACGCCGCGGCGCTGCTG
CTCGCGGTGCTGGTGCTGAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MKLTKRSFVIGSLGGLAMLGLPADLRAQQAGGGTLVIGSTQVPRHFNGAVQSGIATALPSTQIFASPLRFDENWNPQPYL
AKSWEVAPDGLSITLKLVDDAVFHDGKPVTSEDVAFSIMTIKANHPFKTMLAAVDKVETPDPKTAVIKLAHPHPALLLAM
SPALMPILPKHVYGDGQDVKAHPANLKPIGSGPYKLAEYKQGEYYTLEKFDKFFIPGRPKLDKIVVRLISDPNALMVSAE
RGEVHAVPFVTGVRDIDRLEKSKNLKVVDKGFAGLGALNWLAFNTKKKPLDDVRVRQAIAYAANRDFIVNKLMGGKAMPS
TGPIAPGSPFEEKNVQLYKFDVAKAKKLLDEAGLKPDGNGVRATLTIDYLPGSDEQQRNVAEYMRSALKRVGLNLEVRAA
PDFPTWAQRVSNFDFDLTMDSVYNWADPVIGVDRTYLTSNIRKGIIWSNTQQYSNPKVDEILGKAAVETSAEKRKALYSE
FQKIVVDEVPVFFINAVPFHNAFANGLGGLPTTIWGVVSPLDEVHWVTPPKT

Sequences:

>Translated_532_residues
MKLTKRSFVIGSLGGLAMLGLPADLRAQQAGGGTLVIGSTQVPRHFNGAVQSGIATALPSTQIFASPLRFDENWNPQPYL
AKSWEVAPDGLSITLKLVDDAVFHDGKPVTSEDVAFSIMTIKANHPFKTMLAAVDKVETPDPKTAVIKLAHPHPALLLAM
SPALMPILPKHVYGDGQDVKAHPANLKPIGSGPYKLAEYKQGEYYTLEKFDKFFIPGRPKLDKIVVRLISDPNALMVSAE
RGEVHAVPFVTGVRDIDRLEKSKNLKVVDKGFAGLGALNWLAFNTKKKPLDDVRVRQAIAYAANRDFIVNKLMGGKAMPS
TGPIAPGSPFEEKNVQLYKFDVAKAKKLLDEAGLKPDGNGVRATLTIDYLPGSDEQQRNVAEYMRSALKRVGLNLEVRAA
PDFPTWAQRVSNFDFDLTMDSVYNWADPVIGVDRTYLTSNIRKGIIWSNTQQYSNPKVDEILGKAAVETSAEKRKALYSE
FQKIVVDEVPVFFINAVPFHNAFANGLGGLPTTIWGVVSPLDEVHWVTPPKT
>Mature_532_residues
MKLTKRSFVIGSLGGLAMLGLPADLRAQQAGGGTLVIGSTQVPRHFNGAVQSGIATALPSTQIFASPLRFDENWNPQPYL
AKSWEVAPDGLSITLKLVDDAVFHDGKPVTSEDVAFSIMTIKANHPFKTMLAAVDKVETPDPKTAVIKLAHPHPALLLAM
SPALMPILPKHVYGDGQDVKAHPANLKPIGSGPYKLAEYKQGEYYTLEKFDKFFIPGRPKLDKIVVRLISDPNALMVSAE
RGEVHAVPFVTGVRDIDRLEKSKNLKVVDKGFAGLGALNWLAFNTKKKPLDDVRVRQAIAYAANRDFIVNKLMGGKAMPS
TGPIAPGSPFEEKNVQLYKFDVAKAKKLLDEAGLKPDGNGVRATLTIDYLPGSDEQQRNVAEYMRSALKRVGLNLEVRAA
PDFPTWAQRVSNFDFDLTMDSVYNWADPVIGVDRTYLTSNIRKGIIWSNTQQYSNPKVDEILGKAAVETSAEKRKALYSE
FQKIVVDEVPVFFINAVPFHNAFANGLGGLPTTIWGVVSPLDEVHWVTPPKT

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=523, Percent_Identity=25.8126195028681, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1789966, Length=512, Percent_Identity=25.1953125, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI1787762, Length=429, Percent_Identity=25.4079254079254, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1789887, Length=470, Percent_Identity=23.8297872340426, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787551, Length=540, Percent_Identity=22.4074074074074, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787495, Length=536, Percent_Identity=24.8134328358209, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081878, Length=512, Percent_Identity=24.4140625, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87082063, Length=399, Percent_Identity=23.8095238095238, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58264; Mature: 58264

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTKRSFVIGSLGGLAMLGLPADLRAQQAGGGTLVIGSTQVPRHFNGAVQSGIATALPS
CCCCCCEEEEECCCCCEEECCCHHHHHHCCCCCEEEECCCCCCCHHCHHHHHCHHHHCCC
TQIFASPLRFDENWNPQPYLAKSWEVAPDGLSITLKLVDDAVFHDGKPVTSEDVAFSIMT
HHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEHHHHHCCCCCCCCCCEEEEEEE
IKANHPFKTMLAAVDKVETPDPKTAVIKLAHPHPALLLAMSPALMPILPKHVYGDGQDVK
EECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCHHHHHCHHHHCCCCCCCC
AHPANLKPIGSGPYKLAEYKQGEYYTLEKFDKFFIPGRPKLDKIVVRLISDPNALMVSAE
CCCCCCCCCCCCCCCHHHCCCCCEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEC
RGEVHAVPFVTGVRDIDRLEKSKNLKVVDKGFAGLGALNWLAFNTKKKPLDDVRVRQAIA
CCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEECCCCCCHHHHHHHHHHH
YAANRDFIVNKLMGGKAMPSTGPIAPGSPFEEKNVQLYKFDVAKAKKLLDEAGLKPDGNG
HHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCC
VRATLTIDYLPGSDEQQRNVAEYMRSALKRVGLNLEVRAAPDFPTWAQRVSNFDFDLTMD
EEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEHH
SVYNWADPVIGVDRTYLTSNIRKGIIWSNTQQYSNPKVDEILGKAAVETSAEKRKALYSE
HHHCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
FQKIVVDEVPVFFINAVPFHNAFANGLGGLPTTIWGVVSPLDEVHWVTPPKT
HHHHHHHCCCEEEEECCCCHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCCCC
>Mature Secondary Structure
MKLTKRSFVIGSLGGLAMLGLPADLRAQQAGGGTLVIGSTQVPRHFNGAVQSGIATALPS
CCCCCCEEEEECCCCCEEECCCHHHHHHCCCCCEEEECCCCCCCHHCHHHHHCHHHHCCC
TQIFASPLRFDENWNPQPYLAKSWEVAPDGLSITLKLVDDAVFHDGKPVTSEDVAFSIMT
HHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEHHHHHCCCCCCCCCCEEEEEEE
IKANHPFKTMLAAVDKVETPDPKTAVIKLAHPHPALLLAMSPALMPILPKHVYGDGQDVK
EECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCHHHHHCHHHHCCCCCCCC
AHPANLKPIGSGPYKLAEYKQGEYYTLEKFDKFFIPGRPKLDKIVVRLISDPNALMVSAE
CCCCCCCCCCCCCCCHHHCCCCCEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEC
RGEVHAVPFVTGVRDIDRLEKSKNLKVVDKGFAGLGALNWLAFNTKKKPLDDVRVRQAIA
CCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEECCCCCCHHHHHHHHHHH
YAANRDFIVNKLMGGKAMPSTGPIAPGSPFEEKNVQLYKFDVAKAKKLLDEAGLKPDGNG
HHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCC
VRATLTIDYLPGSDEQQRNVAEYMRSALKRVGLNLEVRAAPDFPTWAQRVSNFDFDLTMD
EEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEHH
SVYNWADPVIGVDRTYLTSNIRKGIIWSNTQQYSNPKVDEILGKAAVETSAEKRKALYSE
HHHCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
FQKIVVDEVPVFFINAVPFHNAFANGLGGLPTTIWGVVSPLDEVHWVTPPKT
HHHHHHHCCCEEEEECCCCHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA