Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609191

Identifier: 86609191

GI number: 86609191

Start: 1815337

End: 1815957

Strand: Reverse

Name: 86609191

Synonym: CYB_1732

Alternate gene names: NA

Gene position: 1815957-1815337 (Counterclockwise)

Preceding gene: 86609192

Following gene: 86609187

Centisome position: 59.6

GC content: 63.61

Gene sequence:

>621_bases
ATGATTGGACGACGTCCTACTGTTGCTTCCCAAGGCTGTCGCCAGGACGCCATCGCCCAGGGGCTCAGCCTTCTGCGCCG
TTCTTGGGCGCGGTTGGTTTTCGGCGTATTACTCGGCCTCATCTTGGGCGTGGGCTCCACCTTCTGGGCCACCGCTCAGC
AGCTCCCTGCCGGACAGCAGCTTATTCCCAATCCGCAGCAGTTTCGCGCCCTAGAGCAGCCCAGCAGCGCCCTCAGCGCG
TTGCGAGCCGAACAACTGGCTGCCGAAGCCAATGCCGCCATCCAAGCGCAAAACTACGACCAGGCTGTCGAGCTGCTGCA
GCAGGTGTTCAACGCCTACAACCAGCGCTCCAACTACCACCAAGATCTCTCCCGCGCCTTCGCCGGGATCCAAAACCGCA
TCTCCGAAGAACAGCGGGAGCTGGCCCGTGTTGCCGCCCAAGCCCGGGATCAAGCTGCCTACGATTTGGCCGTGGTCTAC
CGCGCCGCCGGGCGACCGGAAGAGGCCGTGGGCTGGCTGATCCAGGTCATCAACAGCCAGAGCCCAACCCGCGAGCTGGG
CACCCAAGCCTACCAGCAGCTCTTGGAAATCGGCTTCGTCAGCACTCCCTTCCCCAGCTAG

Upstream 100 bases:

>100_bases
CTCCCAGCCTCGCTCCAAAGGGATCCCTGAGCTGCAGCAAAGACCCGAGGAGTAGGGTAGAGTGGAACGGGTCAAAAAAG
GTTTTGGGGGTTACCCGCAC

Downstream 100 bases:

>100_bases
AGCTGCTCTTCCAGATTGCGATAGAAAGCCAGCGCCGTTTGCCCATAGGTTCGTTGGTCAAAGCGCAGCAGGGATCCCAC
CTGGTCTGGTAGCTTCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MIGRRPTVASQGCRQDAIAQGLSLLRRSWARLVFGVLLGLILGVGSTFWATAQQLPAGQQLIPNPQQFRALEQPSSALSA
LRAEQLAAEANAAIQAQNYDQAVELLQQVFNAYNQRSNYHQDLSRAFAGIQNRISEEQRELARVAAQARDQAAYDLAVVY
RAAGRPEEAVGWLIQVINSQSPTRELGTQAYQQLLEIGFVSTPFPS

Sequences:

>Translated_206_residues
MIGRRPTVASQGCRQDAIAQGLSLLRRSWARLVFGVLLGLILGVGSTFWATAQQLPAGQQLIPNPQQFRALEQPSSALSA
LRAEQLAAEANAAIQAQNYDQAVELLQQVFNAYNQRSNYHQDLSRAFAGIQNRISEEQRELARVAAQARDQAAYDLAVVY
RAAGRPEEAVGWLIQVINSQSPTRELGTQAYQQLLEIGFVSTPFPS
>Mature_206_residues
MIGRRPTVASQGCRQDAIAQGLSLLRRSWARLVFGVLLGLILGVGSTFWATAQQLPAGQQLIPNPQQFRALEQPSSALSA
LRAEQLAAEANAAIQAQNYDQAVELLQQVFNAYNQRSNYHQDLSRAFAGIQNRISEEQRELARVAAQARDQAAYDLAVVY
RAAGRPEEAVGWLIQVINSQSPTRELGTQAYQQLLEIGFVSTPFPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22621; Mature: 22621

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRRPTVASQGCRQDAIAQGLSLLRRSWARLVFGVLLGLILGVGSTFWATAQQLPAGQQ
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
LIPNPQQFRALEQPSSALSALRAEQLAAEANAAIQAQNYDQAVELLQQVFNAYNQRSNYH
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH
QDLSRAFAGIQNRISEEQRELARVAAQARDQAAYDLAVVYRAAGRPEEAVGWLIQVINSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
SPTRELGTQAYQQLLEIGFVSTPFPS
CCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIGRRPTVASQGCRQDAIAQGLSLLRRSWARLVFGVLLGLILGVGSTFWATAQQLPAGQQ
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
LIPNPQQFRALEQPSSALSALRAEQLAAEANAAIQAQNYDQAVELLQQVFNAYNQRSNYH
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHH
QDLSRAFAGIQNRISEEQRELARVAAQARDQAAYDLAVVYRAAGRPEEAVGWLIQVINSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
SPTRELGTQAYQQLLEIGFVSTPFPS
CCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA