Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609187

Identifier: 86609187

GI number: 86609187

Start: 1812114

End: 1812728

Strand: Reverse

Name: 86609187

Synonym: CYB_1729

Alternate gene names: NA

Gene position: 1812728-1812114 (Counterclockwise)

Preceding gene: 86609191

Following gene: 86609186

Centisome position: 59.5

GC content: 47.8

Gene sequence:

>615_bases
ATGACCACTGCCCTCGCCCCCCGTAAAACCCACACTTCAGAGGAATACTTTGCCCTGGAAGCTGAATCAGAGGCCACAGG
CGGGATCCGCCGTGAATTTCGCAATGGGGAAATTATTGAGATAACTGGCGGCACACCCATTCATAGCCAACTGATTACCA
GTGTCAATGCCCTACTTTGGCTTAAGCTAAGAGGCAAGGGTTTTTCCGTTTTTTCTAGTGATCTCAGACTTTACATACCT
GCCTTCGAACAATATGTCTATCCCGATGGTATGGTGATCCAAAACCCAGTTCAGCTTAAAGAAGGGAGCAAGGATACTGT
CACTAACCCTATCTTAATTGTGGAAGTGCTCTCGCCTGCCACCGAAAGCTACGATAGAGGAGCGAAGTTTGCTGCCTATC
GCTCTCTCCCAACTTTACAGGAGTATCTGCTAATTGACCAAGCTCGAATCAGTGTAGAACACTACCGCCGCCAGGGAAAT
GTCGAGTGGATCTTCAGGGACTACCATGCCCTGGATGATGTTGTTACGCTGCCATCTGTCAACATCACTTTTTCCCTGGC
AGACATTTACGGTGATATTGAATTAGAGCAAGATTCAAATGCAACACGCTCCTGA

Upstream 100 bases:

>100_bases
GGCTGCACTTGCGACCGAGAGAACCCGAAGGCCACCGCGTCGAGCTTCTCGACACCCGACTGACCGTTTGAGCCATTCTG
CCGCTGCCTGAGGAGATGCC

Downstream 100 bases:

>100_bases
CAAGAACCTACTCCCCCACTTGAAACGTAGATGAGGCAAGTTGGGAATGCCTGAAGTGATTCTGCTAGATATCTACATCC
GGCTCTGGCTAGGGTTATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MTTALAPRKTHTSEEYFALEAESEATGGIRREFRNGEIIEITGGTPIHSQLITSVNALLWLKLRGKGFSVFSSDLRLYIP
AFEQYVYPDGMVIQNPVQLKEGSKDTVTNPILIVEVLSPATESYDRGAKFAAYRSLPTLQEYLLIDQARISVEHYRRQGN
VEWIFRDYHALDDVVTLPSVNITFSLADIYGDIELEQDSNATRS

Sequences:

>Translated_204_residues
MTTALAPRKTHTSEEYFALEAESEATGGIRREFRNGEIIEITGGTPIHSQLITSVNALLWLKLRGKGFSVFSSDLRLYIP
AFEQYVYPDGMVIQNPVQLKEGSKDTVTNPILIVEVLSPATESYDRGAKFAAYRSLPTLQEYLLIDQARISVEHYRRQGN
VEWIFRDYHALDDVVTLPSVNITFSLADIYGDIELEQDSNATRS
>Mature_203_residues
TTALAPRKTHTSEEYFALEAESEATGGIRREFRNGEIIEITGGTPIHSQLITSVNALLWLKLRGKGFSVFSSDLRLYIPA
FEQYVYPDGMVIQNPVQLKEGSKDTVTNPILIVEVLSPATESYDRGAKFAAYRSLPTLQEYLLIDQARISVEHYRRQGNV
EWIFRDYHALDDVVTLPSVNITFSLADIYGDIELEQDSNATRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1290 and sll0925 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008538
- InterPro:   IPR012296
- InterPro:   IPR011335 [H]

Pfam domain/function: PF05685 DUF820 [H]

EC number: NA

Molecular weight: Translated: 22992; Mature: 22861

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTALAPRKTHTSEEYFALEAESEATGGIRREFRNGEIIEITGGTPIHSQLITSVNALLW
CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHCEEEE
LKLRGKGFSVFSSDLRLYIPAFEQYVYPDGMVIQNPVQLKEGSKDTVTNPILIVEVLSPA
EEECCCCCEEEECCEEEEEECHHHHCCCCCEEEECCHHCCCCCCCCCCCCEEEEEECCCC
TESYDRGAKFAAYRSLPTLQEYLLIDQARISVEHYRRQGNVEWIFRDYHALDDVVTLPSV
HHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCEEECCCC
NITFSLADIYGDIELEQDSNATRS
EEEEEEEHEEEEEEEECCCCCCCC
>Mature Secondary Structure 
TTALAPRKTHTSEEYFALEAESEATGGIRREFRNGEIIEITGGTPIHSQLITSVNALLW
CCCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHCEEEE
LKLRGKGFSVFSSDLRLYIPAFEQYVYPDGMVIQNPVQLKEGSKDTVTNPILIVEVLSPA
EEECCCCCEEEECCEEEEEECHHHHCCCCCEEEECCHHCCCCCCCCCCCCEEEEEECCCC
TESYDRGAKFAAYRSLPTLQEYLLIDQARISVEHYRRQGNVEWIFRDYHALDDVVTLPSV
HHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCEEECCCC
NITFSLADIYGDIELEQDSNATRS
EEEEEEEHEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]