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The map label for this gene is cpcS1 [H]

Identifier: 86609088

GI number: 86609088

Start: 1697951

End: 1698505

Strand: Reverse

Name: cpcS1 [H]

Synonym: CYB_1626

Alternate gene names: 86609088

Gene position: 1698505-1697951 (Counterclockwise)

Preceding gene: 86609090

Following gene: 86609087

Centisome position: 55.75

GC content: 58.38

Gene sequence:

>555_bases
ATGAACGCCATCCAGCAATTTCACCACTTTTTCAACTGCTGCATTGGGGCTTGGCGCACAGAGCGCACCTACCATTACCT
AGACCGTGGCGAGGTGGAGCGCTCCCGCACCGAGTTCACCATTCGCACTCTCACCCCTGAGCTCAAGCACAAGGTGCTCG
CCGACAACAACTACCCCAACCACAACGTGGATGGTTTTTTGGGCTTTCACTTGGCTTTTGAGACCGTTTCCGAAACGGGG
GAGGAGGCCGGGCAAGAGCTGAACATGCTGTTCGTCCCTCGGCAGGAAACCCCCCTGGGGCTGCAGGGAGACTACCTGCG
GGATCGGGCCTACGAGGAAGATCGCCCGATGGTGGCGGCTTTCCGGTTTGATCCCGGATCCCTGCAACTGGTGATGACCA
CCACCTACACTCGTGTGGTTGCTGTAGATACCATCACTCTACTGAATCCGCGCCTGCGCCTGCGGCAGATCCTTACCTAC
CAACGTCCCCCTCAGGGTCAGCCTTTGCAGGAGCTGTTGCTGGTGGGGTTTGGGGTAGAACAGAAGCTGACCTAG

Upstream 100 bases:

>100_bases
TTCCTGTTTGTTTTCAATTCGTTTTAGGATCAGAGGCAGGGTTTTCTGGGCCACTTCTCGGCTCCAGCGCCGGCTTCTGA
CTCTGTCCGCTCCCGCCCGC

Downstream 100 bases:

>100_bases
CCTGCGGATCCTGAGCATGACGCTTCCCAAAGACCTGAGATTGTCTCAGCACTTGGCTCTGATCCAGTTGAGGTTCGAGC
GAGGACAATACCGGCAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNAIQQFHHFFNCCIGAWRTERTYHYLDRGEVERSRTEFTIRTLTPELKHKVLADNNYPNHNVDGFLGFHLAFETVSETG
EEAGQELNMLFVPRQETPLGLQGDYLRDRAYEEDRPMVAAFRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTY
QRPPQGQPLQELLLVGFGVEQKLT

Sequences:

>Translated_184_residues
MNAIQQFHHFFNCCIGAWRTERTYHYLDRGEVERSRTEFTIRTLTPELKHKVLADNNYPNHNVDGFLGFHLAFETVSETG
EEAGQELNMLFVPRQETPLGLQGDYLRDRAYEEDRPMVAAFRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTY
QRPPQGQPLQELLLVGFGVEQKLT
>Mature_184_residues
MNAIQQFHHFFNCCIGAWRTERTYHYLDRGEVERSRTEFTIRTLTPELKHKVLADNNYPNHNVDGFLGFHLAFETVSETG
EEAGQELNMLFVPRQETPLGLQGDYLRDRAYEEDRPMVAAFRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTY
QRPPQGQPLQELLLVGFGVEQKLT

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR018536 [H]

Pfam domain/function: PF09367 CpeS [H]

EC number: NA

Molecular weight: Translated: 21345; Mature: 21345

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIQQFHHFFNCCIGAWRTERTYHYLDRGEVERSRTEFTIRTLTPELKHKVLADNNYPN
CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHEEEEEECCHHHHHHHHCCCCCCC
HNVDGFLGFHLAFETVSETGEEAGQELNMLFVPRQETPLGLQGDYLRDRAYEEDRPMVAA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCEEEE
FRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTYQRPPQGQPLQELLLVGFGVE
EEECCCCEEEEEEECEEEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCH
QKLT
HCCC
>Mature Secondary Structure
MNAIQQFHHFFNCCIGAWRTERTYHYLDRGEVERSRTEFTIRTLTPELKHKVLADNNYPN
CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHEEEEEECCHHHHHHHHCCCCCCC
HNVDGFLGFHLAFETVSETGEEAGQELNMLFVPRQETPLGLQGDYLRDRAYEEDRPMVAA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCEEEE
FRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTYQRPPQGQPLQELLLVGFGVE
EEECCCCEEEEEEECEEEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCH
QKLT
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA