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The map label for this gene is psbW [H]

Identifier: 86609069

GI number: 86609069

Start: 1677845

End: 1678159

Strand: Reverse

Name: psbW [H]

Synonym: CYB_1606

Alternate gene names: 86609069

Gene position: 1678159-1677845 (Counterclockwise)

Preceding gene: 86609070

Following gene: 86609061

Centisome position: 55.08

GC content: 56.83

Gene sequence:

>315_bases
ATGGCCAGTATCGAGTTCTCCCCCGGCATCCAAGAGGTGCCCACCCAGGTGCGAGTGCTGAAATCCAAGACCGGCAACCG
GGGATCCGCGATTTTCCGCTTCGAGGATCTAAAATCCGATACGCAAAACATCCTCGGCATGCGGATGATCGATGAGGAAG
GGGAGCTGACCACCCGCAACATCAGGGCCAAGTTCCTGAACGGGGAATTCAAAGCCCTGGAAGTGACCTACGACATGGAA
ACCGAGGCAGAGTGGGATCGCTTCCTGCGCTTTATGGAACGCTTTTCAGCGGCCAACCAGATGGGCATGGCCTAG

Upstream 100 bases:

>100_bases
CTGGAGCAGATGACGGCCCAGGAGCTGAGAGATTTTCTGGAGCAGGATGCGGGGATTGGCCGGTTATAATGGCTTAAATC
ATCGTGTTTCGTAGGACATC

Downstream 100 bases:

>100_bases
TTGCCGCCCTTCCCGCCTCAGCTTTTGGATTTTTTGCTCCTTTTGCCGGATCTGCGCTTGGCTTGAGGTTGGCCGGGATC
GGATCCCTGGCCCTCTTTAA

Product: photosystem II reaction center protein Psb28

Products: NA

Alternate protein names: Photosystem II 13 kDa protein; Photosystem II reaction center W protein [H]

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MASIEFSPGIQEVPTQVRVLKSKTGNRGSAIFRFEDLKSDTQNILGMRMIDEEGELTTRNIRAKFLNGEFKALEVTYDME
TEAEWDRFLRFMERFSAANQMGMA

Sequences:

>Translated_104_residues
MASIEFSPGIQEVPTQVRVLKSKTGNRGSAIFRFEDLKSDTQNILGMRMIDEEGELTTRNIRAKFLNGEFKALEVTYDME
TEAEWDRFLRFMERFSAANQMGMA
>Mature_103_residues
ASIEFSPGIQEVPTQVRVLKSKTGNRGSAIFRFEDLKSDTQNILGMRMIDEEGELTTRNIRAKFLNGEFKALEVTYDMET
EAEWDRFLRFMERFSAANQMGMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psb28 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005610
- ProDom:   PD012692 [H]

Pfam domain/function: PF03912 Psb28 [H]

EC number: NA

Molecular weight: Translated: 11978; Mature: 11847

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIEFSPGIQEVPTQVRVLKSKTGNRGSAIFRFEDLKSDTQNILGMRMIDEEGELTTRN
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCHHHHHHHHEEECCCCCEEHHH
IRAKFLNGEFKALEVTYDMETEAEWDRFLRFMERFSAANQMGMA
HEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASIEFSPGIQEVPTQVRVLKSKTGNRGSAIFRFEDLKSDTQNILGMRMIDEEGELTTRN
CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCHHHHHHHHEEECCCCCEEHHH
IRAKFLNGEFKALEVTYDMETEAEWDRFLRFMERFSAANQMGMA
HEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA