Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86609059
Identifier: 86609059
GI number: 86609059
Start: 1667394
End: 1669037
Strand: Reverse
Name: 86609059
Synonym: CYB_1594
Alternate gene names: NA
Gene position: 1669037-1667394 (Counterclockwise)
Preceding gene: 86609060
Following gene: 86609057
Centisome position: 54.78
GC content: 54.81
Gene sequence:
>1644_bases ATGGCTTCCCGCGGCTCAAGGCCCGGCTTCCGGTCTTCGTTAGCTCCCCTGCTTCTGGCTTCCTCCCTGGCAGGAGGCAT GGTCGCTTGTTCGTTCTCTTCGGATCCGCCTACGGTTACTCAAGTTCCGCCGACCATTTCCGCTCAGGCGCCGGAAACGG CAGTTCGGGGTTCCGAGAGCATTGCTTTCTACTACGACGGGGTAAAGACCTCAGTCACCATCAAGGATGCGGCAGTCCTT TTTGCCGCCTGCACCCTCAACACCAACGACTCCGGGAAGATTGTTAACTTTGTCAATAACACCCTCAAGGTGGGGCCGAT TACGGCTGCCGACGTGACGGGGTTGGGCAACCCGCTCAAGCCGTCCATTTCGGACTTTACTGCCGATGGGGTGGTGGACT GCAAGGATGCGGCGGTTTTGTTTGCGGCAATTTCAACAGGTCTTCCGCCGACGGCCAGTAAGATCAATCCCTTCCTTGCC ACCACCCTGAAGCTCAGCGGTGTCAGCGTCACGCAGCCGAACTTAGATACCCTCTTCAGCGAGCCCACCCCGACTCCGAC ACCGACTCCGACCCCGACTCCGACGCCCACACCTTCGACCATCCAGTTCTTCGTAGATCCAGTGTATGGAGACAATACGA ACCCTGGTACGGCTACTCAGCCATTTCAAACAGTGGAGTATGCGCTAACTACACCCATCGTCAGCTCTGCTGCCAACACT ACCGGCTCAGGCACCGGCGGAGGAACAGATGTAACGGTAACGATTGTCAGGGCAGCAACTCAGGGCGTTTCTAGCAACAT CAGCACCCCTAACCTGACTAAAGGATCTGTGACGGTGGTCGGCCCCAGTGGCTTTAACCTCAATTTGAGCGGCAAGCTCC TAACTCTCAACAAAGGCTATCGCCTCAAGGGCTTCAAGATTACCAGCGGGGATCCGGGTGGGCCTACTCCTACAGCAGCC ATCAACCTTGCCGGTGTGGGCACATCTTTAGAAAACATGAAGATTGACTGTAAGGATCTTGGCACTGGCGGCACGCCCTT TACAAGTTTGGGTGACAGGTGTATTGCAGTAACTGCTCTAACGCTGGGCGGTACCATCTTGCTGCAAGGGCTGGAGGTTC AGATCAAAGGCGACAAAGACTACACCGCCGCCATCGTGCATGCAGGTAACAACACAACTCTGGAGGTAGTCGGCAGTACC ATTGAATCTACCGGCAGCAATGGTCTAGGTGTTGTGGGTGTTTTAGGTGGAGCTTCAGCAGGGCCGGTGATTGTTCAATC GAGCACGGTGAATCTCGAAAGCATTACCAGTGGAACCGACCTTAAACCAAGCATAGCCGTTTGGCTAAACGTCGGAGGCT CCAAGGTGTTGGGCCCAAGCTCTAAGATCAAGCTGAACGGTAACACAGCCAATCAGTTAGGGGCAATTGGGATTAAAGCT AGCCACTCCAGCGGTTCTGTGATCGTGGATGGCACCACCTTCAGCACTGGAACCAATGAGGTTGGTATTGGCATCAAAAA TGCAGCAACGGGAACGGGAACCCTAAGCTTAGGTACCAACACTTTCCCTCCTCCTTCTGGGGATCCTTCTTCCTGCAGCC CTATGAACCCTTGCCTGAAGCATAAAGTTCTCCCTCCTCTTTAA
Upstream 100 bases:
>100_bases GATCAGCGTAAGGTTTGTCTTGTGGTTTCCCTGGAGTGAGCTGGGCAAGTCTTGTCAAGGACTTCTACCCTGGCAAGGAT TCTTCAGTAGGAGGTTTACC
Downstream 100 bases:
>100_bases GCTTGACTCCTCCCCCTGCTGGCCCCGCTAGGGGGCCTTTTTTGGAAGGTACTCGGCTAGGGCAAAAGCTCTATCTCACC CCCAATTGGGCCAAAAACAG
Product: lipoprotein
Products: NA
Alternate protein names: M8 Family Peptidase
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MASRGSRPGFRSSLAPLLLASSLAGGMVACSFSSDPPTVTQVPPTISAQAPETAVRGSESIAFYYDGVKTSVTIKDAAVL FAACTLNTNDSGKIVNFVNNTLKVGPITAADVTGLGNPLKPSISDFTADGVVDCKDAAVLFAAISTGLPPTASKINPFLA TTLKLSGVSVTQPNLDTLFSEPTPTPTPTPTPTPTPTPSTIQFFVDPVYGDNTNPGTATQPFQTVEYALTTPIVSSAANT TGSGTGGGTDVTVTIVRAATQGVSSNISTPNLTKGSVTVVGPSGFNLNLSGKLLTLNKGYRLKGFKITSGDPGGPTPTAA INLAGVGTSLENMKIDCKDLGTGGTPFTSLGDRCIAVTALTLGGTILLQGLEVQIKGDKDYTAAIVHAGNNTTLEVVGST IESTGSNGLGVVGVLGGASAGPVIVQSSTVNLESITSGTDLKPSIAVWLNVGGSKVLGPSSKIKLNGNTANQLGAIGIKA SHSSGSVIVDGTTFSTGTNEVGIGIKNAATGTGTLSLGTNTFPPPSGDPSSCSPMNPCLKHKVLPPL
Sequences:
>Translated_547_residues MASRGSRPGFRSSLAPLLLASSLAGGMVACSFSSDPPTVTQVPPTISAQAPETAVRGSESIAFYYDGVKTSVTIKDAAVL FAACTLNTNDSGKIVNFVNNTLKVGPITAADVTGLGNPLKPSISDFTADGVVDCKDAAVLFAAISTGLPPTASKINPFLA TTLKLSGVSVTQPNLDTLFSEPTPTPTPTPTPTPTPTPSTIQFFVDPVYGDNTNPGTATQPFQTVEYALTTPIVSSAANT TGSGTGGGTDVTVTIVRAATQGVSSNISTPNLTKGSVTVVGPSGFNLNLSGKLLTLNKGYRLKGFKITSGDPGGPTPTAA INLAGVGTSLENMKIDCKDLGTGGTPFTSLGDRCIAVTALTLGGTILLQGLEVQIKGDKDYTAAIVHAGNNTTLEVVGST IESTGSNGLGVVGVLGGASAGPVIVQSSTVNLESITSGTDLKPSIAVWLNVGGSKVLGPSSKIKLNGNTANQLGAIGIKA SHSSGSVIVDGTTFSTGTNEVGIGIKNAATGTGTLSLGTNTFPPPSGDPSSCSPMNPCLKHKVLPPL >Mature_546_residues ASRGSRPGFRSSLAPLLLASSLAGGMVACSFSSDPPTVTQVPPTISAQAPETAVRGSESIAFYYDGVKTSVTIKDAAVLF AACTLNTNDSGKIVNFVNNTLKVGPITAADVTGLGNPLKPSISDFTADGVVDCKDAAVLFAAISTGLPPTASKINPFLAT TLKLSGVSVTQPNLDTLFSEPTPTPTPTPTPTPTPTPSTIQFFVDPVYGDNTNPGTATQPFQTVEYALTTPIVSSAANTT GSGTGGGTDVTVTIVRAATQGVSSNISTPNLTKGSVTVVGPSGFNLNLSGKLLTLNKGYRLKGFKITSGDPGGPTPTAAI NLAGVGTSLENMKIDCKDLGTGGTPFTSLGDRCIAVTALTLGGTILLQGLEVQIKGDKDYTAAIVHAGNNTTLEVVGSTI ESTGSNGLGVVGVLGGASAGPVIVQSSTVNLESITSGTDLKPSIAVWLNVGGSKVLGPSSKIKLNGNTANQLGAIGIKAS HSSGSVIVDGTTFSTGTNEVGIGIKNAATGTGTLSLGTNTFPPPSGDPSSCSPMNPCLKHKVLPPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54835; Mature: 54704
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRGSRPGFRSSLAPLLLASSLAGGMVACSFSSDPPTVTQVPPTISAQAPETAVRGSES CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHCCCCE IAFYYDGVKTSVTIKDAAVLFAACTLNTNDSGKIVNFVNNTLKVGPITAADVTGLGNPLK EEEEECCEEEEEEEEEEEEEEEEEEECCCCCCCEEEEECCEEEECCEEEHHHCCCCCCCC PSISDFTADGVVDCKDAAVLFAAISTGLPPTASKINPFLATTLKLSGVSVTQPNLDTLFS CCHHHCCCCCEEECCHHHEEEEHHHCCCCCCHHHCCCEEEEEEEECCEEEECCCHHHHCC EPTPTPTPTPTPTPTPTPSTIQFFVDPVYGDNTNPGTATQPFQTVEYALTTPIVSSAANT CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHCCCC TGSGTGGGTDVTVTIVRAATQGVSSNISTPNLTKGSVTVVGPSGFNLNLSGKLLTLNKGY CCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCEEEEECCCC RLKGFKITSGDPGGPTPTAAINLAGVGTSLENMKIDCKDLGTGGTPFTSLGDRCIAVTAL EEEEEEECCCCCCCCCCCEEEEEEECCCCHHCCEEEHHCCCCCCCCHHHHCCCEEEEEEE TLGGTILLQGLEVQIKGDKDYTAAIVHAGNNTTLEVVGSTIESTGSNGLGVVGVLGGASA HHCCEEEEEEEEEEEECCCCEEEEEEECCCCCEEEEEECHHHCCCCCCCEEEEEECCCCC GPVIVQSSTVNLESITSGTDLKPSIAVWLNVGGSKVLGPSSKIKLNGNTANQLGAIGIKA CCEEEEECCCCHHHCCCCCCCCCEEEEEEECCCCEEECCCCEEEECCCCCHHCEEEEEEE SHSSGSVIVDGTTFSTGTNEVGIGIKNAATGTGTLSLGTNTFPPPSGDPSSCSPMNPCLK CCCCCCEEECCCEECCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH HKVLPPL CCCCCCC >Mature Secondary Structure ASRGSRPGFRSSLAPLLLASSLAGGMVACSFSSDPPTVTQVPPTISAQAPETAVRGSES CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHCCCCE IAFYYDGVKTSVTIKDAAVLFAACTLNTNDSGKIVNFVNNTLKVGPITAADVTGLGNPLK EEEEECCEEEEEEEEEEEEEEEEEEECCCCCCCEEEEECCEEEECCEEEHHHCCCCCCCC PSISDFTADGVVDCKDAAVLFAAISTGLPPTASKINPFLATTLKLSGVSVTQPNLDTLFS CCHHHCCCCCEEECCHHHEEEEHHHCCCCCCHHHCCCEEEEEEEECCEEEECCCHHHHCC EPTPTPTPTPTPTPTPTPSTIQFFVDPVYGDNTNPGTATQPFQTVEYALTTPIVSSAANT CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHCCCC TGSGTGGGTDVTVTIVRAATQGVSSNISTPNLTKGSVTVVGPSGFNLNLSGKLLTLNKGY CCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCEEEEECCCC RLKGFKITSGDPGGPTPTAAINLAGVGTSLENMKIDCKDLGTGGTPFTSLGDRCIAVTAL EEEEEEECCCCCCCCCCCEEEEEEECCCCHHCCEEEHHCCCCCCCCHHHHCCCEEEEEEE TLGGTILLQGLEVQIKGDKDYTAAIVHAGNNTTLEVVGSTIESTGSNGLGVVGVLGGASA HHCCEEEEEEEEEEEECCCCEEEEEEECCCCCEEEEEECHHHCCCCCCCEEEEEECCCCC GPVIVQSSTVNLESITSGTDLKPSIAVWLNVGGSKVLGPSSKIKLNGNTANQLGAIGIKA CCEEEEECCCCHHHCCCCCCCCCEEEEEEECCCCEEECCCCEEEECCCCCHHCEEEEEEE SHSSGSVIVDGTTFSTGTNEVGIGIKNAATGTGTLSLGTNTFPPPSGDPSSCSPMNPCLK CCCCCCEEECCCEECCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH HKVLPPL CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA