Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608748
Identifier: 86608748
GI number: 86608748
Start: 1330656
End: 1331201
Strand: Direct
Name: 86608748
Synonym: CYB_1272
Alternate gene names: NA
Gene position: 1330656-1331201 (Clockwise)
Preceding gene: 86608747
Following gene: 86608749
Centisome position: 43.68
GC content: 55.86
Gene sequence:
>546_bases GTGCCTGATTTCTCCCGAAGCGGGACTGGAACTGCTATGAGTCGGTTTTCCCCTCATGAAGTGTATCTCCGGAGAATCCT CTTTCGTCTGGCCACTGCGGCTCCTCGTGGCATGACATTGATCGAGTTGCTGGTGGTCATCGTGATTGTCGGTACTCTCT GCGCGGTGGCCATTCCCAACCTGCTCAACCACATTCGCCGCTCCAGAGTTGCTGAAGCCCAAACAGCTTTGGCGACCATT GGCCGTGCTTCGGAAATCTTCCGCATGGACTTTACGGTTTATCCCTCCGGCTACGCCGATATTGAATTCGGAGGGATCCA CGGGGATCGTTATCTGCAAGATCCCTGGCAAGCCTACAACTACCGTCTTCCCGAAGTTGTTCCTCCCACACCTGGCCCAA GCGGCATTCGTTGGATGACGGAGTCTCACACCTACACAGCTGCTGGTGGGAATCCCCTGCGCTGTGACATCGGCCTCGGG GATCGCCAGCAAGAGGTTCTGGTCTCTGGCTACGACCTGCACAACTCCTGCAACCTTTATCATTGA
Upstream 100 bases:
>100_bases GTTCGCGTGATTTGACAGGGAAAGTTTTGGATCCGCAAAGGGTAACCTGAAACCAAGGAAAGGCTGGAATACTGGGGCAA GCTCCTTTGGGTTTAGCTAA
Downstream 100 bases:
>100_bases CTTGCCTGGGCGAGATTTGGCGGCTTGAGGAGACGGGACTGGGCGGACTTGAACCGCCGACCTAGCGCTTAGGAGGCGCT TGCTCTATCCATCTGAGCTA
Product: type IV pilin
Products: NA
Alternate protein names: Pilin Domain-Containing Protein; General Secretion Pathway Protein G
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MPDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPNLLNHIRRSRVAEAQTALATI GRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYNYRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLG DRQQEVLVSGYDLHNSCNLYH
Sequences:
>Translated_181_residues MPDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPNLLNHIRRSRVAEAQTALATI GRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYNYRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLG DRQQEVLVSGYDLHNSCNLYH >Mature_180_residues PDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPNLLNHIRRSRVAEAQTALATIG RASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYNYRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLGD RQQEVLVSGYDLHNSCNLYH
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20095; Mature: 19964
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPN CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH LLNHIRRSRVAEAQTALATIGRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYN HHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCEEECCCCCCCHHCCCHHHHC YRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLGDRQQEVLVSGYDLHNSCNLY CCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCCCCHHHEEECCCCCCCCCCC H C >Mature Secondary Structure PDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPN CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH LLNHIRRSRVAEAQTALATIGRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYN HHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCEEECCCCCCCHHCCCHHHHC YRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLGDRQQEVLVSGYDLHNSCNLY CCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCCCCHHHEEECCCCCCCCCCC H C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA