Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608748

Identifier: 86608748

GI number: 86608748

Start: 1330656

End: 1331201

Strand: Direct

Name: 86608748

Synonym: CYB_1272

Alternate gene names: NA

Gene position: 1330656-1331201 (Clockwise)

Preceding gene: 86608747

Following gene: 86608749

Centisome position: 43.68

GC content: 55.86

Gene sequence:

>546_bases
GTGCCTGATTTCTCCCGAAGCGGGACTGGAACTGCTATGAGTCGGTTTTCCCCTCATGAAGTGTATCTCCGGAGAATCCT
CTTTCGTCTGGCCACTGCGGCTCCTCGTGGCATGACATTGATCGAGTTGCTGGTGGTCATCGTGATTGTCGGTACTCTCT
GCGCGGTGGCCATTCCCAACCTGCTCAACCACATTCGCCGCTCCAGAGTTGCTGAAGCCCAAACAGCTTTGGCGACCATT
GGCCGTGCTTCGGAAATCTTCCGCATGGACTTTACGGTTTATCCCTCCGGCTACGCCGATATTGAATTCGGAGGGATCCA
CGGGGATCGTTATCTGCAAGATCCCTGGCAAGCCTACAACTACCGTCTTCCCGAAGTTGTTCCTCCCACACCTGGCCCAA
GCGGCATTCGTTGGATGACGGAGTCTCACACCTACACAGCTGCTGGTGGGAATCCCCTGCGCTGTGACATCGGCCTCGGG
GATCGCCAGCAAGAGGTTCTGGTCTCTGGCTACGACCTGCACAACTCCTGCAACCTTTATCATTGA

Upstream 100 bases:

>100_bases
GTTCGCGTGATTTGACAGGGAAAGTTTTGGATCCGCAAAGGGTAACCTGAAACCAAGGAAAGGCTGGAATACTGGGGCAA
GCTCCTTTGGGTTTAGCTAA

Downstream 100 bases:

>100_bases
CTTGCCTGGGCGAGATTTGGCGGCTTGAGGAGACGGGACTGGGCGGACTTGAACCGCCGACCTAGCGCTTAGGAGGCGCT
TGCTCTATCCATCTGAGCTA

Product: type IV pilin

Products: NA

Alternate protein names: Pilin Domain-Containing Protein; General Secretion Pathway Protein G

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MPDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPNLLNHIRRSRVAEAQTALATI
GRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYNYRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLG
DRQQEVLVSGYDLHNSCNLYH

Sequences:

>Translated_181_residues
MPDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPNLLNHIRRSRVAEAQTALATI
GRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYNYRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLG
DRQQEVLVSGYDLHNSCNLYH
>Mature_180_residues
PDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPNLLNHIRRSRVAEAQTALATIG
RASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYNYRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLGD
RQQEVLVSGYDLHNSCNLYH

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20095; Mature: 19964

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPN
CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLNHIRRSRVAEAQTALATIGRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYN
HHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCEEECCCCCCCHHCCCHHHHC
YRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLGDRQQEVLVSGYDLHNSCNLY
CCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCCCCHHHEEECCCCCCCCCCC
H
C
>Mature Secondary Structure 
PDFSRSGTGTAMSRFSPHEVYLRRILFRLATAAPRGMTLIELLVVIVIVGTLCAVAIPN
CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLNHIRRSRVAEAQTALATIGRASEIFRMDFTVYPSGYADIEFGGIHGDRYLQDPWQAYN
HHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCEEECCCCCCCHHCCCHHHHC
YRLPEVVPPTPGPSGIRWMTESHTYTAAGGNPLRCDIGLGDRQQEVLVSGYDLHNSCNLY
CCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCCCCHHHEEECCCCCCCCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA