Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608741

Identifier: 86608741

GI number: 86608741

Start: 1322410

End: 1323615

Strand: Direct

Name: 86608741

Synonym: CYB_1265

Alternate gene names: NA

Gene position: 1322410-1323615 (Clockwise)

Preceding gene: 86608740

Following gene: 86608746

Centisome position: 43.4

GC content: 58.21

Gene sequence:

>1206_bases
GTGAACTGGAATCTTACCCGCGCTTTTTCTCCCTCGAGAGGCTGGGCTATTGGCCTGGCAGTCGCCGCTCTACTGGGATC
CACCCCCACAACAGCGCAAGAGACCTTCAAAGTGGGCATGGTGCTGGTGGGGCCGATGCAGGATGGCGGCTGGAGCCAGG
CGCATGTGGAGGGCAGCGAATACGTCAAGGCCAAGTTGCCCGGTGTCGAGTTTGATTACCTGGATAAGGTGAACCCGGCG
GATCGGCCCAATGTGCGCGCCTCCCAGGTGGCGGATGACATGATCGCCCGAGGTGCGAAGGTTATCATCTTTACTTCCGA
TGACCACAAAGACGATGCGATTGAAACGGCCCGCAAGCATCCTGAGATCGCAGTTATCCATGCTTCTGGGGACATGGCCT
GGAAGGAAGGGAAAAATTACATCGATCTGCCCAACTTGGCCAACATCATGCCCCAGATGGAAGCGATGCGCATGGTGGCC
GGATGTGCCGCGGCTCTGGGATCCGAAACCGGCAAAATTGGCCTGTTGGGGCCTCTGATCAACGACGAAACCCGCCGTTA
CGCTGCTGCCGCCTACTTGGGAGCCAAATACTGCTGGGAAACTTACCGAGATCGTCCTGAAGAGTTGCAGTTCCGGGTGA
CCTGGATTGGCTTCTGGTTCAACATTCCAGGGGTTACTTTGGATCCAAGCAAGGTTGCCGATGACTTTTACAACAGCGGC
TTTGATGTGGTGATGTCGGGGTTGGATACGCCGGAGGCGGCGGTACAAGGCAAGCGGGCTGCTGAGGTCGGAAAGCGAGT
GCGCTACACCCACTACGGCCTGGCCAGCGGTTGTAACTTTGCGCCCGAAATTTGCCTGGGGGTTTCCTACTACAACTGGG
GGCCTGGCTACAAGCAATTGATCGAGGCGGCTCGCGCGGGCACCTTCGAGAGCCAATTCCTGCGTCCGCCCATCGACTGG
TCAGACATCAACAACCCGGACACGTCTTCGGCGGGGTTCATCATGGGAGAAGCCCTGGAGCCAGAAGATAGGGCTAAGTT
GGAGGAGTTCATCGCCGGCTTGGGGAATGGCAGCATTCAGCTCTTCAAGGGGCCGCTCAACTTCCAAGATGGCACGCCCT
TCTTGGCTGAGGGGGAAGTGGCCAGCGAGGTCGAGATTTGGTATCTGGGCCAGTTGCTGCAGGGCATGGAGGGAGCCAGC
AATTAG

Upstream 100 bases:

>100_bases
CAAGCGCCTTTTTGTATTCTCAGATACAGCGATCTGCAGCGGGATCCCGATGATGGATGTAGTCTTCCGGCTTTGGATCC
CTGTTCTGTTGGAGCTGCCT

Downstream 100 bases:

>100_bases
CGGAAGGCGTTCTAGGCTCCGGGGAGGGGGAAGAAGCGGTCGGTGGCTTTCACCCGCTGACACCAGGCTCGGATCTGAGG
AAAGGGCTTGAGGTCAAACC

Product: hypothetical protein

Products: NA

Alternate protein names: Bmp Family Protein; Bmp Family Membrane Protein; Lipoprotein; Basic Membrane Protein; ABC Transporter; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; ABC Transporter Periplasmic/Surface Lipoprotein; Outer Membrane Lipoprotein; Basic Membrane Lipoprotein Family Protein; Surface Lipoprotein; Signal Peptide Protein; ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSEYVKAKLPGVEFDYLDKVNPA
DRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKHPEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVA
GCAAALGSETGKIGLLGPLINDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG
FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQLIEAARAGTFESQFLRPPIDW
SDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQLFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGAS
N

Sequences:

>Translated_401_residues
MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSEYVKAKLPGVEFDYLDKVNPA
DRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKHPEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVA
GCAAALGSETGKIGLLGPLINDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG
FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQLIEAARAGTFESQFLRPPIDW
SDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQLFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGAS
N
>Mature_401_residues
MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSEYVKAKLPGVEFDYLDKVNPA
DRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKHPEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVA
GCAAALGSETGKIGLLGPLINDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG
FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQLIEAARAGTFESQFLRPPIDW
SDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQLFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGAS
N

Specific function: Unknown

COG id: COG1744

COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43756; Mature: 43756

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSE
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEEEEECCCCCCCCEEECCCCC
YVKAKLPGVEFDYLDKVNPADRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKH
EEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCC
PEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVAGCAAALGSETGKIGLLGPLI
CCEEEEECCCCCHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
NDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEECHHHHHHHHHCCC
FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQL
HHHHHCCCCCHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCCHHHEECCCCCCCCCHHHH
IEAARAGTFESQFLRPPIDWSDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQ
HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEE
LFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGASN
EEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSE
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEEEEECCCCCCCCEEECCCCC
YVKAKLPGVEFDYLDKVNPADRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKH
EEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCC
PEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVAGCAAALGSETGKIGLLGPLI
CCEEEEECCCCCHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
NDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEECHHHHHHHHHCCC
FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQL
HHHHHCCCCCHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCCHHHEECCCCCCCCCHHHH
IEAARAGTFESQFLRPPIDWSDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQ
HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEE
LFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGASN
EEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA