Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608741
Identifier: 86608741
GI number: 86608741
Start: 1322410
End: 1323615
Strand: Direct
Name: 86608741
Synonym: CYB_1265
Alternate gene names: NA
Gene position: 1322410-1323615 (Clockwise)
Preceding gene: 86608740
Following gene: 86608746
Centisome position: 43.4
GC content: 58.21
Gene sequence:
>1206_bases GTGAACTGGAATCTTACCCGCGCTTTTTCTCCCTCGAGAGGCTGGGCTATTGGCCTGGCAGTCGCCGCTCTACTGGGATC CACCCCCACAACAGCGCAAGAGACCTTCAAAGTGGGCATGGTGCTGGTGGGGCCGATGCAGGATGGCGGCTGGAGCCAGG CGCATGTGGAGGGCAGCGAATACGTCAAGGCCAAGTTGCCCGGTGTCGAGTTTGATTACCTGGATAAGGTGAACCCGGCG GATCGGCCCAATGTGCGCGCCTCCCAGGTGGCGGATGACATGATCGCCCGAGGTGCGAAGGTTATCATCTTTACTTCCGA TGACCACAAAGACGATGCGATTGAAACGGCCCGCAAGCATCCTGAGATCGCAGTTATCCATGCTTCTGGGGACATGGCCT GGAAGGAAGGGAAAAATTACATCGATCTGCCCAACTTGGCCAACATCATGCCCCAGATGGAAGCGATGCGCATGGTGGCC GGATGTGCCGCGGCTCTGGGATCCGAAACCGGCAAAATTGGCCTGTTGGGGCCTCTGATCAACGACGAAACCCGCCGTTA CGCTGCTGCCGCCTACTTGGGAGCCAAATACTGCTGGGAAACTTACCGAGATCGTCCTGAAGAGTTGCAGTTCCGGGTGA CCTGGATTGGCTTCTGGTTCAACATTCCAGGGGTTACTTTGGATCCAAGCAAGGTTGCCGATGACTTTTACAACAGCGGC TTTGATGTGGTGATGTCGGGGTTGGATACGCCGGAGGCGGCGGTACAAGGCAAGCGGGCTGCTGAGGTCGGAAAGCGAGT GCGCTACACCCACTACGGCCTGGCCAGCGGTTGTAACTTTGCGCCCGAAATTTGCCTGGGGGTTTCCTACTACAACTGGG GGCCTGGCTACAAGCAATTGATCGAGGCGGCTCGCGCGGGCACCTTCGAGAGCCAATTCCTGCGTCCGCCCATCGACTGG TCAGACATCAACAACCCGGACACGTCTTCGGCGGGGTTCATCATGGGAGAAGCCCTGGAGCCAGAAGATAGGGCTAAGTT GGAGGAGTTCATCGCCGGCTTGGGGAATGGCAGCATTCAGCTCTTCAAGGGGCCGCTCAACTTCCAAGATGGCACGCCCT TCTTGGCTGAGGGGGAAGTGGCCAGCGAGGTCGAGATTTGGTATCTGGGCCAGTTGCTGCAGGGCATGGAGGGAGCCAGC AATTAG
Upstream 100 bases:
>100_bases CAAGCGCCTTTTTGTATTCTCAGATACAGCGATCTGCAGCGGGATCCCGATGATGGATGTAGTCTTCCGGCTTTGGATCC CTGTTCTGTTGGAGCTGCCT
Downstream 100 bases:
>100_bases CGGAAGGCGTTCTAGGCTCCGGGGAGGGGGAAGAAGCGGTCGGTGGCTTTCACCCGCTGACACCAGGCTCGGATCTGAGG AAAGGGCTTGAGGTCAAACC
Product: hypothetical protein
Products: NA
Alternate protein names: Bmp Family Protein; Bmp Family Membrane Protein; Lipoprotein; Basic Membrane Protein; ABC Transporter; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; ABC Transporter Periplasmic/Surface Lipoprotein; Outer Membrane Lipoprotein; Basic Membrane Lipoprotein Family Protein; Surface Lipoprotein; Signal Peptide Protein; ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSEYVKAKLPGVEFDYLDKVNPA DRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKHPEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVA GCAAALGSETGKIGLLGPLINDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQLIEAARAGTFESQFLRPPIDW SDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQLFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGAS N
Sequences:
>Translated_401_residues MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSEYVKAKLPGVEFDYLDKVNPA DRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKHPEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVA GCAAALGSETGKIGLLGPLINDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQLIEAARAGTFESQFLRPPIDW SDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQLFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGAS N >Mature_401_residues MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSEYVKAKLPGVEFDYLDKVNPA DRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKHPEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVA GCAAALGSETGKIGLLGPLINDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQLIEAARAGTFESQFLRPPIDW SDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQLFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGAS N
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43756; Mature: 43756
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSE CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEEEEECCCCCCCCEEECCCCC YVKAKLPGVEFDYLDKVNPADRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKH EEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCC PEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVAGCAAALGSETGKIGLLGPLI CCEEEEECCCCCHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC NDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEECHHHHHHHHHCCC FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQL HHHHHCCCCCHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCCHHHEECCCCCCCCCHHHH IEAARAGTFESQFLRPPIDWSDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQ HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEE LFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGASN EEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNWNLTRAFSPSRGWAIGLAVAALLGSTPTTAQETFKVGMVLVGPMQDGGWSQAHVEGSE CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHEEEEEEEECCCCCCCCEEECCCCC YVKAKLPGVEFDYLDKVNPADRPNVRASQVADDMIARGAKVIIFTSDDHKDDAIETARKH EEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCC PEIAVIHASGDMAWKEGKNYIDLPNLANIMPQMEAMRMVAGCAAALGSETGKIGLLGPLI CCEEEEECCCCCHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC NDETRRYAAAAYLGAKYCWETYRDRPEELQFRVTWIGFWFNIPGVTLDPSKVADDFYNSG CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEECHHHHHHHHHCCC FDVVMSGLDTPEAAVQGKRAAEVGKRVRYTHYGLASGCNFAPEICLGVSYYNWGPGYKQL HHHHHCCCCCHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCCHHHEECCCCCCCCCHHHH IEAARAGTFESQFLRPPIDWSDINNPDTSSAGFIMGEALEPEDRAKLEEFIAGLGNGSIQ HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEE LFKGPLNFQDGTPFLAEGEVASEVEIWYLGQLLQGMEGASN EEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA