Click here to switch to the map view.

The map label for this gene is smpB [H]

Identifier: 86608740

GI number: 86608740

Start: 1321806

End: 1322270

Strand: Direct

Name: smpB [H]

Synonym: CYB_1264

Alternate gene names: 86608740

Gene position: 1321806-1322270 (Clockwise)

Preceding gene: 86608739

Following gene: 86608741

Centisome position: 43.39

GC content: 59.57

Gene sequence:

>465_bases
ATGGCTGTGGATCCCAACGTCAAAACCCTGGTTGACAACCGTCGCGCCCGCTTCGAGTACGACATCTTGGAGACCTATGA
GGCCGGGATCCAACTGACCGGCACAGAGGTGAAATCGATACGAGCGGGCAAAGCCAACCTGCAAGACGCTTTTGCCCTCT
TTCGGGATGGGGAAGCATGGCTGCACAATCTGCACATCTCCCCCCATGACACCGCCAGCAAAGTGTTTAACCACGACCCT
ACCCGCCGCCGCAAGTTGCTGCTGCACCGCCGCGAGATCGACCGCCTACGGGGCTTGGTGGAACAAAAGGGCCTGACCGT
GGTTCCCCTCAAGCTGGTGCTCAACCGCGGCTGGATCAAAGCCCATCTGGGCGTGGCCCGCGGCAAAAAGCTCCACGACA
AGCGGCAGGCAATCAAAGAGCGGCAAACCCAGCGGGAGATTCAGCGGGAACTGAAGGAACGATAA

Upstream 100 bases:

>100_bases
TTCTCTGGCGCGGCAAATCCGAGCGCTTGGTTGGGCGGGCGGTGCGAAAATTGGAGAGATCCCTGACCTCTCGTTAGGCC
CTCTGGTCTACTGAAAGCCT

Downstream 100 bases:

>100_bases
ATTTCTCCCTGAGCCCCTGCTGGCTTCCACGTCGTTTGCCAAGCGCCTTTTTGTATTCTCAGATACAGCGATCTGCAGCG
GGATCCCGATGATGGATGTA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAVDPNVKTLVDNRRARFEYDILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAWLHNLHISPHDTASKVFNHDP
TRRRKLLLHRREIDRLRGLVEQKGLTVVPLKLVLNRGWIKAHLGVARGKKLHDKRQAIKERQTQREIQRELKER

Sequences:

>Translated_154_residues
MAVDPNVKTLVDNRRARFEYDILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAWLHNLHISPHDTASKVFNHDP
TRRRKLLLHRREIDRLRGLVEQKGLTVVPLKLVLNRGWIKAHLGVARGKKLHDKRQAIKERQTQREIQRELKER
>Mature_153_residues
AVDPNVKTLVDNRRARFEYDILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAWLHNLHISPHDTASKVFNHDPT
RRRKLLLHRREIDRLRGLVEQKGLTVVPLKLVLNRGWIKAHLGVARGKKLHDKRQAIKERQTQREIQRELKER

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=148, Percent_Identity=52.027027027027, Blast_Score=147, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17940; Mature: 17809

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDPNVKTLVDNRRARFEYDILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAW
CCCCCCHHHHHCCCHHHHHHHHHHHHHCCEEECCCHHHHHHCCCCHHHHHHHHHHCCHHH
LHNLHISPHDTASKVFNHDPTRRRKLLLHRREIDRLRGLVEQKGLTVVPLKLVLNRGWIK
HHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCCCHHH
AHLGVARGKKLHDKRQAIKERQTQREIQRELKER
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVDPNVKTLVDNRRARFEYDILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAW
CCCCCHHHHHCCCHHHHHHHHHHHHHCCEEECCCHHHHHHCCCCHHHHHHHHHHCCHHH
LHNLHISPHDTASKVFNHDPTRRRKLLLHRREIDRLRGLVEQKGLTVVPLKLVLNRGWIK
HHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCCCHHH
AHLGVARGKKLHDKRQAIKERQTQREIQRELKER
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA