| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is pncB [H]
Identifier: 86608574
GI number: 86608574
Start: 1130673
End: 1132055
Strand: Reverse
Name: pncB [H]
Synonym: CYB_1096
Alternate gene names: 86608574
Gene position: 1132055-1130673 (Counterclockwise)
Preceding gene: 86608575
Following gene: 86608573
Centisome position: 37.16
GC content: 61.68
Gene sequence:
>1383_bases ATGTTGAGCCCTGATTTCTCGTCGTTGCGGCCCCAAGACTATGGCCTGCTAACCGACCTGTACCAGTTCACCATGGCCGC CTGCTACGTGGGGGAAGGGCTAGAGTCTCAGCCCGCTGCCTTTGAGCTGTTTGTGCGGCGGCTGCCCACCGACTATGGCT ACCTAATCGCCATGGGGCTCACCCAGGCAGTGGACTATCTGCAGCAACTGAGCTTCGCCCCCGAGGCTTTGCGAGCGCTG CGGGAAACGGGCATTTTCGCCGATGCGCCGGAGCGCTTTTGGGAGCTGCTGGCCCGCTGCCGGTTTGAGGGGGATGTGTG GGCGGTGCCGGAAGGAACCGCCATTTTCGCCAACCAGCCCCTGTTGCGGGTGGAAGCCCCCCTCTGGCAAGCCCAACTGG TGGAAACTTACTTGCTGTCCACCTTTAACTACCAGACCCTGATCGCCACCAAGGCGGCCCGTATGCGAGATGCAGCAGGG GATGAGGCCATTTTGTTGGAGTTCGGCACCCGGCGAGCTTTTGGTCCCCAGGCGGGGCTGTGGGCAGCCCGGGCGGCTCT GGCGGCAGGGTTCAATGCCACCTCCAACGTCTTGGCAGCCCTGAAATTGGGGCGCAAGCCGGCAGGAACCATGGCCCATT CCCTAGTGATGGCCATTGCTGCTCTCTCGGGAGACGAAACCCGCGCCTTTCAATCCTTTCGGCGCTACTTTCCCCAAGCT GCGCTTCTAATCGATACCTACGATCCCATCCAAGGGGCGCGCACAGCAGCCCAGCTCTTTGCGGCCAGAAGCCCAGATCA ACTGGGATCCCAGGGGGAAATCGGCGGGGTGCGCATCGACTCGGGAGATTTGGAAGATCTCTCTCGCCGGGTGAAACAAA TTTTGCCTCAAGGCGCCCCGGTGTTCGTCAGTGGGGATTTGGACGAATACGAGATCGAGCGCCTGCATCGCTCCCAAGCC CCCATCAGCGGTTATGGGGTGGGCACCCGCCTGGTAACTGGAGAAGGCGTAAACGGGGTGTACAAATTGGTGGAAATCAA TGGGATCCCAGTGGCCAAAGCTTCCTTTGCCAAAGCCACCCTTCCCGGTCGCAAGCAGATCTTTCGCGGCCCTGAAGGAG ACTTGTTGGGCCATGCTGACGAGCCCCCGCCTCCTGGCTACGAACCGCTCTTGCGCAAAGTTATGGAAAAAGGGCTGCTG CTGGATCCCTTGCCGGATCTGGAAGCCATTGCCCGCACCAGCCGCGCCTCTGTGCTGTGCCTGCCCCAGGGAGTGCGACA ACTGCGCCAGCCGGATCCCTGGCCCACAGCCCTGACTGCCGCTTTGCAACGGTTGAAAGACCACACCCTTGGCCAGGAAT GTGCCTCGGCGGGCCCTGCCTGA
Upstream 100 bases:
>100_bases CTACAAGCAGCCTTACTTATGGTAAGTTTCACTATAACCTTCGCAACAGCCCTCTGCTCGATCCCGCCGTTCCCCACTGG CTTCTGCCCCGAGGTTTTTC
Downstream 100 bases:
>100_bases GGAGAAGGAGTCCCGCTGCACTATAATGTTCTAGCTTCAAGGTCTCCGCTTTGAGGTTTGAGTTTTGCCATTGGACTTGA GCCTCAGGCCATTTTGATTT
Product: nicotinate phosphoribosyltransferase
Products: NA
Alternate protein names: NAPRTase [H]
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MLSPDFSSLRPQDYGLLTDLYQFTMAACYVGEGLESQPAAFELFVRRLPTDYGYLIAMGLTQAVDYLQQLSFAPEALRAL RETGIFADAPERFWELLARCRFEGDVWAVPEGTAIFANQPLLRVEAPLWQAQLVETYLLSTFNYQTLIATKAARMRDAAG DEAILLEFGTRRAFGPQAGLWAARAALAAGFNATSNVLAALKLGRKPAGTMAHSLVMAIAALSGDETRAFQSFRRYFPQA ALLIDTYDPIQGARTAAQLFAARSPDQLGSQGEIGGVRIDSGDLEDLSRRVKQILPQGAPVFVSGDLDEYEIERLHRSQA PISGYGVGTRLVTGEGVNGVYKLVEINGIPVAKASFAKATLPGRKQIFRGPEGDLLGHADEPPPPGYEPLLRKVMEKGLL LDPLPDLEAIARTSRASVLCLPQGVRQLRQPDPWPTALTAALQRLKDHTLGQECASAGPA
Sequences:
>Translated_460_residues MLSPDFSSLRPQDYGLLTDLYQFTMAACYVGEGLESQPAAFELFVRRLPTDYGYLIAMGLTQAVDYLQQLSFAPEALRAL RETGIFADAPERFWELLARCRFEGDVWAVPEGTAIFANQPLLRVEAPLWQAQLVETYLLSTFNYQTLIATKAARMRDAAG DEAILLEFGTRRAFGPQAGLWAARAALAAGFNATSNVLAALKLGRKPAGTMAHSLVMAIAALSGDETRAFQSFRRYFPQA ALLIDTYDPIQGARTAAQLFAARSPDQLGSQGEIGGVRIDSGDLEDLSRRVKQILPQGAPVFVSGDLDEYEIERLHRSQA PISGYGVGTRLVTGEGVNGVYKLVEINGIPVAKASFAKATLPGRKQIFRGPEGDLLGHADEPPPPGYEPLLRKVMEKGLL LDPLPDLEAIARTSRASVLCLPQGVRQLRQPDPWPTALTAALQRLKDHTLGQECASAGPA >Mature_460_residues MLSPDFSSLRPQDYGLLTDLYQFTMAACYVGEGLESQPAAFELFVRRLPTDYGYLIAMGLTQAVDYLQQLSFAPEALRAL RETGIFADAPERFWELLARCRFEGDVWAVPEGTAIFANQPLLRVEAPLWQAQLVETYLLSTFNYQTLIATKAARMRDAAG DEAILLEFGTRRAFGPQAGLWAARAALAAGFNATSNVLAALKLGRKPAGTMAHSLVMAIAALSGDETRAFQSFRRYFPQA ALLIDTYDPIQGARTAAQLFAARSPDQLGSQGEIGGVRIDSGDLEDLSRRVKQILPQGAPVFVSGDLDEYEIERLHRSQA PISGYGVGTRLVTGEGVNGVYKLVEINGIPVAKASFAKATLPGRKQIFRGPEGDLLGHADEPPPPGYEPLLRKVMEKGLL LDPLPDLEAIARTSRASVLCLPQGVRQLRQPDPWPTALTAALQRLKDHTLGQECASAGPA
Specific function: Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN) [H]
COG id: COG1488
COG function: function code H; Nicotinic acid phosphoribosyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAPRTase family [H]
Homologues:
Organism=Homo sapiens, GI194394158, Length=537, Percent_Identity=32.5884543761639, Blast_Score=184, Evalue=2e-46, Organism=Caenorhabditis elegans, GI71997947, Length=537, Percent_Identity=30.9124767225326, Blast_Score=198, Evalue=6e-51, Organism=Caenorhabditis elegans, GI71997952, Length=537, Percent_Identity=30.9124767225326, Blast_Score=197, Evalue=7e-51, Organism=Caenorhabditis elegans, GI71997955, Length=207, Percent_Identity=37.1980676328502, Blast_Score=137, Evalue=1e-32, Organism=Drosophila melanogaster, GI24581587, Length=518, Percent_Identity=31.2741312741313, Blast_Score=179, Evalue=2e-45, Organism=Drosophila melanogaster, GI161076680, Length=216, Percent_Identity=37.962962962963, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24581595, Length=216, Percent_Identity=37.962962962963, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI28574709, Length=216, Percent_Identity=37.962962962963, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24581593, Length=216, Percent_Identity=37.962962962963, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24581591, Length=216, Percent_Identity=37.962962962963, Blast_Score=127, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015977 - InterPro: IPR007229 - InterPro: IPR006405 - InterPro: IPR002638 [H]
Pfam domain/function: PF04095 NAPRTase [H]
EC number: =2.4.2.11 [H]
Molecular weight: Translated: 49958; Mature: 49958
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSPDFSSLRPQDYGLLTDLYQFTMAACYVGEGLESQPAAFELFVRRLPTDYGYLIAMGL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH TQAVDYLQQLSFAPEALRALRETGIFADAPERFWELLARCRFEGDVWAVPEGTAIFANQP HHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEEECCCC LLRVEAPLWQAQLVETYLLSTFNYQTLIATKAARMRDAAGDEAILLEFGTRRAFGPQAGL CEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHH WAARAALAAGFNATSNVLAALKLGRKPAGTMAHSLVMAIAALSGDETRAFQSFRRYFPQA HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC ALLIDTYDPIQGARTAAQLFAARSPDQLGSQGEIGGVRIDSGDLEDLSRRVKQILPQGAP EEEEECCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCC VFVSGDLDEYEIERLHRSQAPISGYGVGTRLVTGEGVNGVYKLVEINGIPVAKASFAKAT EEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHC LPGRKQIFRGPEGDLLGHADEPPPPGYEPLLRKVMEKGLLLDPLPDLEAIARTSRASVLC CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEE LPQGVRQLRQPDPWPTALTAALQRLKDHTLGQECASAGPA CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLSPDFSSLRPQDYGLLTDLYQFTMAACYVGEGLESQPAAFELFVRRLPTDYGYLIAMGL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH TQAVDYLQQLSFAPEALRALRETGIFADAPERFWELLARCRFEGDVWAVPEGTAIFANQP HHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEEECCCC LLRVEAPLWQAQLVETYLLSTFNYQTLIATKAARMRDAAGDEAILLEFGTRRAFGPQAGL CEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHH WAARAALAAGFNATSNVLAALKLGRKPAGTMAHSLVMAIAALSGDETRAFQSFRRYFPQA HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC ALLIDTYDPIQGARTAAQLFAARSPDQLGSQGEIGGVRIDSGDLEDLSRRVKQILPQGAP EEEEECCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCC VFVSGDLDEYEIERLHRSQAPISGYGVGTRLVTGEGVNGVYKLVEINGIPVAKASFAKAT EEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHC LPGRKQIFRGPEGDLLGHADEPPPPGYEPLLRKVMEKGLLLDPLPDLEAIARTSRASVLC CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEE LPQGVRQLRQPDPWPTALTAALQRLKDHTLGQECASAGPA CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]