Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 86608468

GI number: 86608468

Start: 1025388

End: 1025630

Strand: Direct

Name: nifU [H]

Synonym: CYB_0989

Alternate gene names: 86608468

Gene position: 1025388-1025630 (Clockwise)

Preceding gene: 86608462

Following gene: 86608469

Centisome position: 33.66

GC content: 55.56

Gene sequence:

>243_bases
ATGGCACAAGCACTGGAACTCAATACCGAGAACGTCGAGAAAGTCCTGAACGAGCTGCGTCCTTACTTGATGGCCGATGG
GGGCAATGTGGAATTGGTGGAAATCGATGGCCCGGTGGTCAAGCTGCGCTTGCAGGGGGCCTGTGGAGCCTGCCCCAGCT
CGACCATGACTCTAAAGATGGGCATTGAGCGCAAGTTGCGGGAGAGCATTCCCGATATTTTGGAGGTGGAGCAGGTATTC
TGA

Upstream 100 bases:

>100_bases
AGGATGCGATCGCTTCTTTCCTGAACCATGTTCAGGAGAGTTCAGCGTGAATGTATCAGAAACCGCTACAATCCAAATCT
CAACGAGGCTAAAAGCAACC

Downstream 100 bases:

>100_bases
GGGGCCCTGTAGGTTTTTGTGAGATTCCTTTAGGGTTCTTTATCATGTGTTGGATTATGTGCCTTGACAAATAGCCTCGG
GTGGCTCTCTGCTCCCCACT

Product: NifU domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MAQALELNTENVEKVLNELRPYLMADGGNVELVEIDGPVVKLRLQGACGACPSSTMTLKMGIERKLRESIPDILEVEQVF

Sequences:

>Translated_80_residues
MAQALELNTENVEKVLNELRPYLMADGGNVELVEIDGPVVKLRLQGACGACPSSTMTLKMGIERKLRESIPDILEVEQVF
>Mature_79_residues
AQALELNTENVEKVLNELRPYLMADGGNVELVEIDGPVVKLRLQGACGACPSSTMTLKMGIERKLRESIPDILEVEQVF

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17541876, Length=61, Percent_Identity=47.5409836065574, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45551492, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643765, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45556188, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001075
- ProDom:   PD002830 [H]

Pfam domain/function: PF01106 NifU [H]

EC number: NA

Molecular weight: Translated: 8815; Mature: 8684

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQALELNTENVEKVLNELRPYLMADGGNVELVEIDGPVVKLRLQGACGACPSSTMTLKM
CCCCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEE
GIERKLRESIPDILEVEQVF
CHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
AQALELNTENVEKVLNELRPYLMADGGNVELVEIDGPVVKLRLQGACGACPSSTMTLKM
CCCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEE
GIERKLRESIPDILEVEQVF
CHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8424961 [H]