| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608327
Identifier: 86608327
GI number: 86608327
Start: 878590
End: 879339
Strand: Direct
Name: 86608327
Synonym: CYB_0845
Alternate gene names: NA
Gene position: 878590-879339 (Clockwise)
Preceding gene: 86608326
Following gene: 86608331
Centisome position: 28.84
GC content: 53.2
Gene sequence:
>750_bases ATGGGGATCTCTACCCCCAAAATTGAGTGGAGCCATCTTGCCGCTGGATTTGGATCCCTGCTCGACAACTGTTTCAAAAC GGTGAAGGTGGGGGATGTCAGAGCTAGCCTAGACAGAGATTCGGCCATCCTAAACAACGGGGATCCTGTGATGCTATCGA CTCCAGAGTTGTCCATTTCAGGTCAAAAGCTAACTCCCGAACAGTTTCTGGCCTTGCCGGAGGGGGATATTGTCTATGAG CTAGTCGATGGGCGGGCCCTCTCCAAAAACGAACCCATGTCGCCAAAACGCTTCCATGCTCGTCTCCAACCGGTGTTGTG GCAAATTTTGGAGGACTGGTGCTCTAGCCCTGAGTGTCCTAAGCCTGGGTCAGCACATACTGAGTGGGCAGTTGTTTTAA CACGAAAGGCAGAGCCCTGGATCCCAGTTCCTGATGTTACTTACATCTCTAACGAGCGGTTGCCGGTTGAGGCCATGACC GATGAAGCTTGTTTTGCCATTCCCGAGTTGGTGATCGAGATCCTTTCTCCTGGCCAGAGTTTTGGAGCCATAGCCCAGAA GGCAACCGATTATCTAGAAGCTGGGATCCCCCGCGTTTGGGTTGTGGATCCCCAAGCCAAGAGCATCACCGTCTTCTATC CCGATGCCCCGCCGCGCACCTTTACGGGATCCCAAGCCATTCAAGATGATTTCCTGCCGGGTCTAAAGGTGATCCCTCAA GATGTATTCGCTCAAGCCCGGATCCCTTAG
Upstream 100 bases:
>100_bases AAGCCCCCCCTTCTCAAGTTGCCTGGAGAGGGTTCTGGGTTGAATGTTGCCCTATCCTCTCCCGAAAAGTGGCATCCTCT GCTCAGCCGGTGCCAGAAAG
Downstream 100 bases:
>100_bases GGGGTACCTAGCGAGCCCACGATAATCAGAGTTAGTTCCAGAAAGAGAGCATCCGGCAGAGGTGGCCACCCGCTCGGGTC TGGAGCTGATTGGCTCAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MGISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSISGQKLTPEQFLALPEGDIVYE LVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECPKPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMT DEACFAIPELVIEILSPGQSFGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ DVFAQARIP
Sequences:
>Translated_249_residues MGISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSISGQKLTPEQFLALPEGDIVYE LVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECPKPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMT DEACFAIPELVIEILSPGQSFGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ DVFAQARIP >Mature_248_residues GISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSISGQKLTPEQFLALPEGDIVYEL VDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECPKPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMTD EACFAIPELVIEILSPGQSFGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQD VFAQARIP
Specific function: Unknown
COG id: COG4636
COG function: function code S; Uncharacterized protein conserved in cyanobacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27335; Mature: 27204
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSIS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCCCEEEEECCCCEEC GQKLTPEQFLALPEGDIVYELVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECP CCCCCHHHHHCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC KPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMTDEACFAIPELVIEILSPGQS CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCH FGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ HHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHCCH DVFAQARIP HHHHHCCCC >Mature Secondary Structure GISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSIS CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCCCEEEEECCCCEEC GQKLTPEQFLALPEGDIVYELVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECP CCCCCHHHHHCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC KPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMTDEACFAIPELVIEILSPGQS CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCH FGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ HHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHCCH DVFAQARIP HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA