Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608327

Identifier: 86608327

GI number: 86608327

Start: 878590

End: 879339

Strand: Direct

Name: 86608327

Synonym: CYB_0845

Alternate gene names: NA

Gene position: 878590-879339 (Clockwise)

Preceding gene: 86608326

Following gene: 86608331

Centisome position: 28.84

GC content: 53.2

Gene sequence:

>750_bases
ATGGGGATCTCTACCCCCAAAATTGAGTGGAGCCATCTTGCCGCTGGATTTGGATCCCTGCTCGACAACTGTTTCAAAAC
GGTGAAGGTGGGGGATGTCAGAGCTAGCCTAGACAGAGATTCGGCCATCCTAAACAACGGGGATCCTGTGATGCTATCGA
CTCCAGAGTTGTCCATTTCAGGTCAAAAGCTAACTCCCGAACAGTTTCTGGCCTTGCCGGAGGGGGATATTGTCTATGAG
CTAGTCGATGGGCGGGCCCTCTCCAAAAACGAACCCATGTCGCCAAAACGCTTCCATGCTCGTCTCCAACCGGTGTTGTG
GCAAATTTTGGAGGACTGGTGCTCTAGCCCTGAGTGTCCTAAGCCTGGGTCAGCACATACTGAGTGGGCAGTTGTTTTAA
CACGAAAGGCAGAGCCCTGGATCCCAGTTCCTGATGTTACTTACATCTCTAACGAGCGGTTGCCGGTTGAGGCCATGACC
GATGAAGCTTGTTTTGCCATTCCCGAGTTGGTGATCGAGATCCTTTCTCCTGGCCAGAGTTTTGGAGCCATAGCCCAGAA
GGCAACCGATTATCTAGAAGCTGGGATCCCCCGCGTTTGGGTTGTGGATCCCCAAGCCAAGAGCATCACCGTCTTCTATC
CCGATGCCCCGCCGCGCACCTTTACGGGATCCCAAGCCATTCAAGATGATTTCCTGCCGGGTCTAAAGGTGATCCCTCAA
GATGTATTCGCTCAAGCCCGGATCCCTTAG

Upstream 100 bases:

>100_bases
AAGCCCCCCCTTCTCAAGTTGCCTGGAGAGGGTTCTGGGTTGAATGTTGCCCTATCCTCTCCCGAAAAGTGGCATCCTCT
GCTCAGCCGGTGCCAGAAAG

Downstream 100 bases:

>100_bases
GGGGTACCTAGCGAGCCCACGATAATCAGAGTTAGTTCCAGAAAGAGAGCATCCGGCAGAGGTGGCCACCCGCTCGGGTC
TGGAGCTGATTGGCTCAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MGISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSISGQKLTPEQFLALPEGDIVYE
LVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECPKPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMT
DEACFAIPELVIEILSPGQSFGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ
DVFAQARIP

Sequences:

>Translated_249_residues
MGISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSISGQKLTPEQFLALPEGDIVYE
LVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECPKPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMT
DEACFAIPELVIEILSPGQSFGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ
DVFAQARIP
>Mature_248_residues
GISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSISGQKLTPEQFLALPEGDIVYEL
VDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECPKPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMTD
EACFAIPELVIEILSPGQSFGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQD
VFAQARIP

Specific function: Unknown

COG id: COG4636

COG function: function code S; Uncharacterized protein conserved in cyanobacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27335; Mature: 27204

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSIS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCCCEEEEECCCCEEC
GQKLTPEQFLALPEGDIVYELVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECP
CCCCCHHHHHCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
KPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMTDEACFAIPELVIEILSPGQS
CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCH
FGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ
HHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHCCH
DVFAQARIP
HHHHHCCCC
>Mature Secondary Structure 
GISTPKIEWSHLAAGFGSLLDNCFKTVKVGDVRASLDRDSAILNNGDPVMLSTPELSIS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEECCCCEEEEECCCCEEC
GQKLTPEQFLALPEGDIVYELVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECP
CCCCCHHHHHCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
KPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMTDEACFAIPELVIEILSPGQS
CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCH
FGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQ
HHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHCCH
DVFAQARIP
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA