| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608282
Identifier: 86608282
GI number: 86608282
Start: 824573
End: 825922
Strand: Direct
Name: 86608282
Synonym: CYB_0798
Alternate gene names: NA
Gene position: 824573-825922 (Clockwise)
Preceding gene: 86608281
Following gene: 86608283
Centisome position: 27.06
GC content: 45.26
Gene sequence:
>1350_bases ATGACTGCGGCTAGCTCTCTCCGAGAGAAGCTTGAGAGGATATCTCCCACCGAGAGGGTAGAGCGAGTTGTTGTCCAACA CTTTGCTTCTCCTCTCCTGCAGGCGCTTGGCTTTGACGACTTGGAAATTAGATATGAATTCGAGACAGGTTGTGGCCAGG TCGACCTCGCCGCAAGAAAGAACGAAGATCCTGAAGATACTTTCTTTAACTCCCAAAGGAACCCCTACTTGCTTTTGGAG GCAAAATCCAGAGTAGTCAACCTCAAAGAAGGATCTTACTATAGGGATGCAGTTTGTCAAATAGAAAGCTACCTGCTCGG CGAGAACTGCAAATCTGCAAAATGGGGAATTATCACCAATGCAAACAACATCCAGATCTGGAGGAAGCATGGAAAAGTCG TCCACCCTGCTACAGCAAACTTCTCCATTAATCCAGATAACATTGAGAGCATAGTGCGTAACTTGCGAGACAAGATAGAA AACTATGAACGCGCTCTGACTGTATGCGTGTATAACAATAAAGGGGGCGTAGGCAAAACAACGACGGTCATTAACCTTGC AGCAGCACTAAAAACCAAGGGAAAAAAGGTCTTAGTTGTTGACTTTGATTCTCAGGGTGATCTGACAAGAAGTTTGGGAG CCACTCCTGGAAAAATTACACTGACGCAATGTTTAAAGGATCCCAAAATAGACATCCATGCCATTGTCCAAACATATAGA CTCAAATATAGACTCAAAGGCAAGCAGACTACCCTTCCCATCTTCGACATTATCCCAAGAGACCCTGAGCTGGAGACGTT GACCGACAGCCAGTCGCTAGCATATATCCAAAAGGGAACCCGACGCCTTCGAGATCTGATTGCCCCTCTTCGCAATGAGT ATGATTACATCCTAATCGACTGCCCAACTCAATGGCTTTACTTCAGCCAAAGTGGTGTTTTTGCTGCCGATGTTATTTTG ATACCTACCCGCCCCGACGATCTGTCTTCCCTGAATAATGCTGCTAGAGTAATCACCAGCTTTGTTCCAGAAACTGCTAA GTCACGACAGGATGGCGGCCCCAGGACTTTGCCTATCTTTTTCAACGGCGTTTCTTCGGGAAGTGAATACACTATTCAAC TAGCTAACGAAGAGATAGGTAAGCTTATCGACCAGGAGAAAAGTGTAGATCTACGTCCATATTTCTGGCCGCATTTTAAG AAAGGTAATGAAAACAAAAGCATTTTTAGGATACCTGACTATGCAGTGATATCCTCTGCAAGCTTTGATCGAACTCCTGC CGTCTTTAGGGACAGGAGAGTTTTAGAATACTACCAGAGTCTTGCCCGTGAGTACTTTATCGATGAGTGA
Upstream 100 bases:
>100_bases CAGCCCAAGCACTAGCAGAACGAGCCAAGCAACTGCTATGCTGAGGGCGAGCTTTTAGCTTGGTTAGCATTGTCCACCTT ATTTTTTCCTATTTTTTCCT
Downstream 100 bases:
>100_bases GTTTTCAGATCTAGGTAGGTTGGTTAACTTACCCCTTGAGAGCATTACGCCCGCCGATGGGTTTTCTGCTCCCTCCTTCC TTGTTGCCGCAGCCGCAGAT
Product: CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MTAASSLREKLERISPTERVERVVVQHFASPLLQALGFDDLEIRYEFETGCGQVDLAARKNEDPEDTFFNSQRNPYLLLE AKSRVVNLKEGSYYRDAVCQIESYLLGENCKSAKWGIITNANNIQIWRKHGKVVHPATANFSINPDNIESIVRNLRDKIE NYERALTVCVYNNKGGVGKTTTVINLAAALKTKGKKVLVVDFDSQGDLTRSLGATPGKITLTQCLKDPKIDIHAIVQTYR LKYRLKGKQTTLPIFDIIPRDPELETLTDSQSLAYIQKGTRRLRDLIAPLRNEYDYILIDCPTQWLYFSQSGVFAADVIL IPTRPDDLSSLNNAARVITSFVPETAKSRQDGGPRTLPIFFNGVSSGSEYTIQLANEEIGKLIDQEKSVDLRPYFWPHFK KGNENKSIFRIPDYAVISSASFDRTPAVFRDRRVLEYYQSLAREYFIDE
Sequences:
>Translated_449_residues MTAASSLREKLERISPTERVERVVVQHFASPLLQALGFDDLEIRYEFETGCGQVDLAARKNEDPEDTFFNSQRNPYLLLE AKSRVVNLKEGSYYRDAVCQIESYLLGENCKSAKWGIITNANNIQIWRKHGKVVHPATANFSINPDNIESIVRNLRDKIE NYERALTVCVYNNKGGVGKTTTVINLAAALKTKGKKVLVVDFDSQGDLTRSLGATPGKITLTQCLKDPKIDIHAIVQTYR LKYRLKGKQTTLPIFDIIPRDPELETLTDSQSLAYIQKGTRRLRDLIAPLRNEYDYILIDCPTQWLYFSQSGVFAADVIL IPTRPDDLSSLNNAARVITSFVPETAKSRQDGGPRTLPIFFNGVSSGSEYTIQLANEEIGKLIDQEKSVDLRPYFWPHFK KGNENKSIFRIPDYAVISSASFDRTPAVFRDRRVLEYYQSLAREYFIDE >Mature_448_residues TAASSLREKLERISPTERVERVVVQHFASPLLQALGFDDLEIRYEFETGCGQVDLAARKNEDPEDTFFNSQRNPYLLLEA KSRVVNLKEGSYYRDAVCQIESYLLGENCKSAKWGIITNANNIQIWRKHGKVVHPATANFSINPDNIESIVRNLRDKIEN YERALTVCVYNNKGGVGKTTTVINLAAALKTKGKKVLVVDFDSQGDLTRSLGATPGKITLTQCLKDPKIDIHAIVQTYRL KYRLKGKQTTLPIFDIIPRDPELETLTDSQSLAYIQKGTRRLRDLIAPLRNEYDYILIDCPTQWLYFSQSGVFAADVILI PTRPDDLSSLNNAARVITSFVPETAKSRQDGGPRTLPIFFNGVSSGSEYTIQLANEEIGKLIDQEKSVDLRPYFWPHFKK GNENKSIFRIPDYAVISSASFDRTPAVFRDRRVLEYYQSLAREYFIDE
Specific function: Unknown
COG id: COG1192
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis soj [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002586 [H]
Pfam domain/function: PF01656 CbiA [H]
EC number: NA
Molecular weight: Translated: 50966; Mature: 50835
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAASSLREKLERISPTERVERVVVQHFASPLLQALGFDDLEIRYEFETGCGQVDLAARK CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHCC NEDPEDTFFNSQRNPYLLLEAKSRVVNLKEGSYYRDAVCQIESYLLGENCKSAKWGIITN CCCCCHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC ANNIQIWRKHGKVVHPATANFSINPDNIESIVRNLRDKIENYERALTVCVYNNKGGVGKT CCCEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCH TTVINLAAALKTKGKKVLVVDFDSQGDLTRSLGATPGKITLTQCLKDPKIDIHAIVQTYR HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHCCCCCCEEHHHHHCCCCCHHHHHHHHHH LKYRLKGKQTTLPIFDIIPRDPELETLTDSQSLAYIQKGTRRLRDLIAPLRNEYDYILID EEEEECCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE CPTQWLYFSQSGVFAADVILIPTRPDDLSSLNNAARVITSFVPETAKSRQDGGPRTLPIF CCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEE FNGVSSGSEYTIQLANEEIGKLIDQEKSVDLRPYFWPHFKKGNENKSIFRIPDYAVISSA EECCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHEEECC SFDRTPAVFRDRRVLEYYQSLAREYFIDE CCCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TAASSLREKLERISPTERVERVVVQHFASPLLQALGFDDLEIRYEFETGCGQVDLAARK CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHCC NEDPEDTFFNSQRNPYLLLEAKSRVVNLKEGSYYRDAVCQIESYLLGENCKSAKWGIITN CCCCCHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC ANNIQIWRKHGKVVHPATANFSINPDNIESIVRNLRDKIENYERALTVCVYNNKGGVGKT CCCEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCH TTVINLAAALKTKGKKVLVVDFDSQGDLTRSLGATPGKITLTQCLKDPKIDIHAIVQTYR HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHCCCCCCEEHHHHHCCCCCHHHHHHHHHH LKYRLKGKQTTLPIFDIIPRDPELETLTDSQSLAYIQKGTRRLRDLIAPLRNEYDYILID EEEEECCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE CPTQWLYFSQSGVFAADVILIPTRPDDLSSLNNAARVITSFVPETAKSRQDGGPRTLPIF CCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEE FNGVSSGSEYTIQLANEEIGKLIDQEKSVDLRPYFWPHFKKGNENKSIFRIPDYAVISSA EECCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHEEECC SFDRTPAVFRDRRVLEYYQSLAREYFIDE CCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]