| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608188
Identifier: 86608188
GI number: 86608188
Start: 719294
End: 720901
Strand: Direct
Name: 86608188
Synonym: CYB_0704
Alternate gene names: NA
Gene position: 719294-720901 (Clockwise)
Preceding gene: 86608186
Following gene: 86608193
Centisome position: 23.61
GC content: 60.32
Gene sequence:
>1608_bases ATGGAAGGGGAAGAGGAGCTAAAAGCCTTGCGGGCGCGGGTGCGCAACCTAGAGCGATCCCTCGCCGAATCGGAAGCGCT GTCATTGCAGCAGATTGAGTGCATCCATCGCCTGGAACATCAACTGCTGGAAGCACAGGCCCAGATTCAAGAGCGGGATC AAGCTTTGCAAGCGTGTCAAGAGGAGAAAGCACGGCTGGCCCAGCGCCCTACCCCAGAGGCTTTTCAGCTTCAGCAACAG CACATCGAAGAACTGCAGAATCTCCTGTGGGAAATGGAGCGCCGTCCAACGCTGGAGCACTACCACATTCTGCAGCAGCA GTTGCAAACCAGTCAGACGGAAATTGAAACCCTCAAGGCGGAATTGCAGCGGCGCGTCGATCCGGCCCGATTTTACCAAC TGCAGCAGGAGCTCCTGGAGCTGAAACAGCAGGCCAACCAATTGGGAGAATACGCCGTCAAGTTGCCGCAGGTGCAGCTT TTGCAAGCCCAACTGCAGCTCCGTGTACAGCAGCTAGAGGAGGAAAAAGCACAATTGCAAGCGCAAATCCAAGAGTTGGC TGCTCGACCTTCTGCACAAGAACTGGAAACCCTACGGGCGGAGCTAGAGGCTGCCCACCGCCAAGCGGAAGCCGAATGGC AGCGTTTGAAGACCCATCTGGAAACCGAAAAGGCACACATGGAAGCTGACCTGAACACCGCCCGGCAACGTATTCGCGAA CTGGAAGAGCGTCCTACCCCAGAGCAATGGGCACGCTTGCAGGCGGAGCTGGATCATCTGCGCCAACAGGCCTCTTTTGC CAAGGCCGAGCGGGCCACCTTGCTGGAAGAGCTGCAGCAGAGTCAGCGGCAGCAGGCCGAGCAAGCCCAACAGATTGCCA AGCTGGAAGCGGAAGCAGCCCAGGCCGCCCACCTCAGGGAAACAGAGTCCTCACAGGCGCAGCGAATCCTTGCCCTGGAG GAGCAGGTGCAGGCTTTGACCCGCGAGCTTGGTGCTTTGCGAGCCGAGCGGGATCAGCTCATGCAAGAGTTGGCCCAGCG TCCCACCCTTGCCCAGTGGCAGGAAGTTCAGCAGCAGGTGCAGGACACCCGAGAAAGCCTGGAAGCAGCCCGGCGGGGGC GAGAACTGGCCGAGGCCCATCATCTGGTCAGCCAAAAGCAAATCGAGAAGTTGCAGCAGCAGGTGATGGCTTTGAAAACC GAGTGTGTGCAGGCCCACGCCTACGCGCAAACCCAAGAAAAGGAAGTGGCCCTGCTGCAGCAGCGCAATCAAGAACTGGA AGAGCAACTGGCCACACTGCGTCAGTCGGCCTCCGCTTCCCCTCAGCCAGCGGTTGTCGAGGCCAGGTCGAATCATCGGG CCCAGGAACGGATTCCTGCCGCGGCTGACGAGTCTGCTCCTTCCCCGGCCACCACCTGGAGAACACCCACCCCAGGGATC CCGCCGCTCACCCTGGACGAGCGGGAAGAAAGTGCCCCGCTCGGCTGGCGCCAACGGACAGAAAGGCTCCTGAAACGCTC CGCTTTGGCCGCTTCACGGGCAGGAGGGGAAACGGGCAGTCGCAACCGGATTGAGTTGCCGACTTTTGTGCAGCGGCGGC CCTACTGA
Upstream 100 bases:
>100_bases TGGGAAAAGCTAAAAATTTACACTACAGATAGTGGCGAGCTGGATTTTCATCCAGACCATCTGCTACAGTAAGGCCCATA ACCTGTCGAGCAGCCTGGAT
Downstream 100 bases:
>100_bases GCGCTCCATTCTCGGGGATCCAACCGTTCTCCGGCTTGAAAACGAGGCCAAGCCCAGCGCAGCAGGGATCCCAATTGGGC GTGAAATCGCTCCGGGGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 535; Mature: 535
Protein sequence:
>535_residues MEGEEELKALRARVRNLERSLAESEALSLQQIECIHRLEHQLLEAQAQIQERDQALQACQEEKARLAQRPTPEAFQLQQQ HIEELQNLLWEMERRPTLEHYHILQQQLQTSQTEIETLKAELQRRVDPARFYQLQQELLELKQQANQLGEYAVKLPQVQL LQAQLQLRVQQLEEEKAQLQAQIQELAARPSAQELETLRAELEAAHRQAEAEWQRLKTHLETEKAHMEADLNTARQRIRE LEERPTPEQWARLQAELDHLRQQASFAKAERATLLEELQQSQRQQAEQAQQIAKLEAEAAQAAHLRETESSQAQRILALE EQVQALTRELGALRAERDQLMQELAQRPTLAQWQEVQQQVQDTRESLEAARRGRELAEAHHLVSQKQIEKLQQQVMALKT ECVQAHAYAQTQEKEVALLQQRNQELEEQLATLRQSASASPQPAVVEARSNHRAQERIPAAADESAPSPATTWRTPTPGI PPLTLDEREESAPLGWRQRTERLLKRSALAASRAGGETGSRNRIELPTFVQRRPY
Sequences:
>Translated_535_residues MEGEEELKALRARVRNLERSLAESEALSLQQIECIHRLEHQLLEAQAQIQERDQALQACQEEKARLAQRPTPEAFQLQQQ HIEELQNLLWEMERRPTLEHYHILQQQLQTSQTEIETLKAELQRRVDPARFYQLQQELLELKQQANQLGEYAVKLPQVQL LQAQLQLRVQQLEEEKAQLQAQIQELAARPSAQELETLRAELEAAHRQAEAEWQRLKTHLETEKAHMEADLNTARQRIRE LEERPTPEQWARLQAELDHLRQQASFAKAERATLLEELQQSQRQQAEQAQQIAKLEAEAAQAAHLRETESSQAQRILALE EQVQALTRELGALRAERDQLMQELAQRPTLAQWQEVQQQVQDTRESLEAARRGRELAEAHHLVSQKQIEKLQQQVMALKT ECVQAHAYAQTQEKEVALLQQRNQELEEQLATLRQSASASPQPAVVEARSNHRAQERIPAAADESAPSPATTWRTPTPGI PPLTLDEREESAPLGWRQRTERLLKRSALAASRAGGETGSRNRIELPTFVQRRPY >Mature_535_residues MEGEEELKALRARVRNLERSLAESEALSLQQIECIHRLEHQLLEAQAQIQERDQALQACQEEKARLAQRPTPEAFQLQQQ HIEELQNLLWEMERRPTLEHYHILQQQLQTSQTEIETLKAELQRRVDPARFYQLQQELLELKQQANQLGEYAVKLPQVQL LQAQLQLRVQQLEEEKAQLQAQIQELAARPSAQELETLRAELEAAHRQAEAEWQRLKTHLETEKAHMEADLNTARQRIRE LEERPTPEQWARLQAELDHLRQQASFAKAERATLLEELQQSQRQQAEQAQQIAKLEAEAAQAAHLRETESSQAQRILALE EQVQALTRELGALRAERDQLMQELAQRPTLAQWQEVQQQVQDTRESLEAARRGRELAEAHHLVSQKQIEKLQQQVMALKT ECVQAHAYAQTQEKEVALLQQRNQELEEQLATLRQSASASPQPAVVEARSNHRAQERIPAAADESAPSPATTWRTPTPGI PPLTLDEREESAPLGWRQRTERLLKRSALAASRAGGETGSRNRIELPTFVQRRPY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61696; Mature: 61696
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGEEELKALRARVRNLERSLAESEALSLQQIECIHRLEHQLLEAQAQIQERDQALQACQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEKARLAQRPTPEAFQLQQQHIEELQNLLWEMERRPTLEHYHILQQQLQTSQTEIETLKA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH ELQRRVDPARFYQLQQELLELKQQANQLGEYAVKLPQVQLLQAQLQLRVQQLEEEKAQLQ HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH AQIQELAARPSAQELETLRAELEAAHRQAEAEWQRLKTHLETEKAHMEADLNTARQRIRE HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEERPTPEQWARLQAELDHLRQQASFAKAERATLLEELQQSQRQQAEQAQQIAKLEAEAA HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAAHLRETESSQAQRILALEEQVQALTRELGALRAERDQLMQELAQRPTLAQWQEVQQQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH QDTRESLEAARRGRELAEAHHLVSQKQIEKLQQQVMALKTECVQAHAYAQTQEKEVALLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRNQELEEQLATLRQSASASPQPAVVEARSNHRAQERIPAAADESAPSPATTWRTPTPGI HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC PPLTLDEREESAPLGWRQRTERLLKRSALAASRAGGETGSRNRIELPTFVQRRPY CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCC >Mature Secondary Structure MEGEEELKALRARVRNLERSLAESEALSLQQIECIHRLEHQLLEAQAQIQERDQALQACQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEKARLAQRPTPEAFQLQQQHIEELQNLLWEMERRPTLEHYHILQQQLQTSQTEIETLKA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH ELQRRVDPARFYQLQQELLELKQQANQLGEYAVKLPQVQLLQAQLQLRVQQLEEEKAQLQ HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH AQIQELAARPSAQELETLRAELEAAHRQAEAEWQRLKTHLETEKAHMEADLNTARQRIRE HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEERPTPEQWARLQAELDHLRQQASFAKAERATLLEELQQSQRQQAEQAQQIAKLEAEAA HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAAHLRETESSQAQRILALEEQVQALTRELGALRAERDQLMQELAQRPTLAQWQEVQQQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH QDTRESLEAARRGRELAEAHHLVSQKQIEKLQQQVMALKTECVQAHAYAQTQEKEVALLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRNQELEEQLATLRQSASASPQPAVVEARSNHRAQERIPAAADESAPSPATTWRTPTPGI HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC PPLTLDEREESAPLGWRQRTERLLKRSALAASRAGGETGSRNRIELPTFVQRRPY CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA