Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608133

Identifier: 86608133

GI number: 86608133

Start: 655133

End: 655558

Strand: Direct

Name: 86608133

Synonym: CYB_0645

Alternate gene names: NA

Gene position: 655133-655558 (Clockwise)

Preceding gene: 86608132

Following gene: 86608134

Centisome position: 21.5

GC content: 56.81

Gene sequence:

>426_bases
ATGTCTGGAGAACCCACCCCCGAGGCCGCTGCTGCCGAGAAACCCGCTGAAGCTGCCAAGCCTGCTGCTGAGGATTCCCC
CAAAGCCGCTGCGAAAAAAGTTGCTAAGGAAGAAAAGCCCTTCGAGCAACAGATCACGGAAGAGGTGATCCCGGCGGCCA
TTGCGGCTTTTCAAAAGCGCGGAGTCAGCGATCTGGAGCTGCGCCTGGAAGGCAAGACGCTGGTCGGCGCGTTTGCAGGA
GGCAAGAAGCAATTTAGCGTGCTGTTTGCTGAGGGATCCTTGAATGGCCGCAAGTTCTTCCGCTGTACCACCGAAGGATC
CCCGGCCAGCACCATCGAGTCTTTTATGATCGACGAGCGGCGCGTGGATGTCAACCTATTCGTGTTTTATTTGGTGCAGC
GCCTTTACGCTCAGCAGTGGTATTGA

Upstream 100 bases:

>100_bases
AATACATCCCCAAGGGCTAGCTCTTTGCCGGTTCTGGACAGAGTTTTTGATTGTTCTGCATCTAAGGCTTTTACCCATCT
GATTGTCGGAGCGTTTCCCC

Downstream 100 bases:

>100_bases
GTTCGCGTGACCTTGAAGAATCCCTGGCTACCCCTAGCCGGAGAGAGTAAGCCTGCTCGCAAGAGACGAGGGGAGGTGCA
GCCGGCTGCAGTTACCGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSGEPTPEAAAAEKPAEAAKPAAEDSPKAAAKKVAKEEKPFEQQITEEVIPAAIAAFQKRGVSDLELRLEGKTLVGAFAG
GKKQFSVLFAEGSLNGRKFFRCTTEGSPASTIESFMIDERRVDVNLFVFYLVQRLYAQQWY

Sequences:

>Translated_141_residues
MSGEPTPEAAAAEKPAEAAKPAAEDSPKAAAKKVAKEEKPFEQQITEEVIPAAIAAFQKRGVSDLELRLEGKTLVGAFAG
GKKQFSVLFAEGSLNGRKFFRCTTEGSPASTIESFMIDERRVDVNLFVFYLVQRLYAQQWY
>Mature_140_residues
SGEPTPEAAAAEKPAEAAKPAAEDSPKAAAKKVAKEEKPFEQQITEEVIPAAIAAFQKRGVSDLELRLEGKTLVGAFAGG
KKQFSVLFAEGSLNGRKFFRCTTEGSPASTIESFMIDERRVDVNLFVFYLVQRLYAQQWY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15448; Mature: 15316

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGEPTPEAAAAEKPAEAAKPAAEDSPKAAAKKVAKEEKPFEQQITEEVIPAAIAAFQKR
CCCCCCCCCHHCCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
GVSDLELRLEGKTLVGAFAGGKKQFSVLFAEGSLNGRKFFRCTTEGSPASTIESFMIDER
CCCCEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCC
RVDVNLFVFYLVQRLYAQQWY
CCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGEPTPEAAAAEKPAEAAKPAAEDSPKAAAKKVAKEEKPFEQQITEEVIPAAIAAFQKR
CCCCCCCCHHCCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
GVSDLELRLEGKTLVGAFAGGKKQFSVLFAEGSLNGRKFFRCTTEGSPASTIESFMIDER
CCCCEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCC
RVDVNLFVFYLVQRLYAQQWY
CCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA