Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608031

Identifier: 86608031

GI number: 86608031

Start: 553989

End: 555035

Strand: Direct

Name: 86608031

Synonym: CYB_0539

Alternate gene names: NA

Gene position: 553989-555035 (Clockwise)

Preceding gene: 86608029

Following gene: 86608032

Centisome position: 18.18

GC content: 59.6

Gene sequence:

>1047_bases
ATGCGTTGGTTCTCGTCCTCTGGTGTTCTCGTCAGCCTGCCTTTCCAGTCTTCTGTTGGGCGAAGTGTTCTGCCCCTGTC
TGGCTCGATTTGGCAGCGGCTGGAGGCCTTAGCTCTGGGTTTGCACATTCTGTCTTTGCTTTTTGGGTTGGCAGGGTTGC
TCTGGGTTGTACCCCATCCTGAGTGGGTGGCCAGTTTGCCCCCCATTGGCATTCAAGCTTTCTCCTTGAGCATGGGCAAT
GGCGGCGTGGCCTACATGGTGTTCGGTGCGCTGGCGGCAGCTCTGATGGGATCCCGGCTGTTGGGGGTGCGGCGCCTATT
GATGTTTTTGATCCCGGCGGTGGGCATTTCCTTGGGCAGTGAGCTGTTGGGTACCAGCACTGGGATCCCCTTTGGCAACT
ATGGCTACCTGAGTGGGCTGGGCTACAAGATTGCCGGTTTGGTGCCTTTTACCATCCCTCTGTCTTGGTTTTATGTGGGG
TTGTCATCCTACTTGTTGGCGCGTGTGGCTCTGCAAACCCAGCGCCACTGGTTGATCCACTTCGAGGCCATCATGTTGGG
GGCCCTGCTGCTCACCGCCTGGGACTTCGTGCTGGATCCGGCCATGACCCGCGGCTTGATTCCCTTCTGGACGTGGTTTC
AGCCGGGGCCCTTCTTCGGTATGCCGCTGCAAAACTTCGGTGGTTGGATGCTGACTGGGGCTGCCTTCATGACGGTGGCC
AATCTGCTGTGGGGCGAGGATCAACCCATCCTTGACCGCCGCCAGTTGGTGGGGCCGCTGGTGCTCTATGTAGCTAATTT
TGCTTTTGCCCTGCTGATGAGCCTGGGCTCCGGCATTGCTGCGCCGGCGGGGCTGGGCCTGTTGTTGGGGTTGGGGCCCG
CTTTGGGGTTGTGGTGGAGTGCAGAGACTCCATCCCCCTATCGCGACCAGCCTGTGCCGCCTTCCCATCCTGAACAGGAC
TCCATCCCGCTATTGCAAACGGTCGAGGGAGAGGCAGGTCGGGACTGGGATACTTTGGAGGATCCCGGTTGGGTTGGCGC
GAAGTAA

Upstream 100 bases:

>100_bases
TTTAGGCTCTCTCTTGGGGCCATCCGCTTTTTCCCTCAGCCGCCGTATGGGTTGCAAGGAGACAGAGCGGCTTCGCTTAA
CCACTCTTCGGGAGTTTCTC

Downstream 100 bases:

>100_bases
GCCGGCCCTAACCCTTCCTCGGCGAGATCCCCCAGTTGTCCAGGCCATGAACTTTTGCAGCGACAATGTTACAGGCGCTT
GTCCTGAGGTGATGGAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRWFSSSGVLVSLPFQSSVGRSVLPLSGSIWQRLEALALGLHILSLLFGLAGLLWVVPHPEWVASLPPIGIQAFSLSMGN
GGVAYMVFGALAAALMGSRLLGVRRLLMFLIPAVGISLGSELLGTSTGIPFGNYGYLSGLGYKIAGLVPFTIPLSWFYVG
LSSYLLARVALQTQRHWLIHFEAIMLGALLLTAWDFVLDPAMTRGLIPFWTWFQPGPFFGMPLQNFGGWMLTGAAFMTVA
NLLWGEDQPILDRRQLVGPLVLYVANFAFALLMSLGSGIAAPAGLGLLLGLGPALGLWWSAETPSPYRDQPVPPSHPEQD
SIPLLQTVEGEAGRDWDTLEDPGWVGAK

Sequences:

>Translated_348_residues
MRWFSSSGVLVSLPFQSSVGRSVLPLSGSIWQRLEALALGLHILSLLFGLAGLLWVVPHPEWVASLPPIGIQAFSLSMGN
GGVAYMVFGALAAALMGSRLLGVRRLLMFLIPAVGISLGSELLGTSTGIPFGNYGYLSGLGYKIAGLVPFTIPLSWFYVG
LSSYLLARVALQTQRHWLIHFEAIMLGALLLTAWDFVLDPAMTRGLIPFWTWFQPGPFFGMPLQNFGGWMLTGAAFMTVA
NLLWGEDQPILDRRQLVGPLVLYVANFAFALLMSLGSGIAAPAGLGLLLGLGPALGLWWSAETPSPYRDQPVPPSHPEQD
SIPLLQTVEGEAGRDWDTLEDPGWVGAK
>Mature_348_residues
MRWFSSSGVLVSLPFQSSVGRSVLPLSGSIWQRLEALALGLHILSLLFGLAGLLWVVPHPEWVASLPPIGIQAFSLSMGN
GGVAYMVFGALAAALMGSRLLGVRRLLMFLIPAVGISLGSELLGTSTGIPFGNYGYLSGLGYKIAGLVPFTIPLSWFYVG
LSSYLLARVALQTQRHWLIHFEAIMLGALLLTAWDFVLDPAMTRGLIPFWTWFQPGPFFGMPLQNFGGWMLTGAAFMTVA
NLLWGEDQPILDRRQLVGPLVLYVANFAFALLMSLGSGIAAPAGLGLLLGLGPALGLWWSAETPSPYRDQPVPPSHPEQD
SIPLLQTVEGEAGRDWDTLEDPGWVGAK

Specific function: Unknown

COG id: COG2324

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37501; Mature: 37501

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWFSSSGVLVSLPFQSSVGRSVLPLSGSIWQRLEALALGLHILSLLFGLAGLLWVVPHP
CCEECCCCEEEEECCHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EWVASLPPIGIQAFSLSMGNGGVAYMVFGALAAALMGSRLLGVRRLLMFLIPAVGISLGS
HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLGTSTGIPFGNYGYLSGLGYKIAGLVPFTIPLSWFYVGLSSYLLARVALQTQRHWLIH
HHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEAIMLGALLLTAWDFVLDPAMTRGLIPFWTWFQPGPFFGMPLQNFGGWMLTGAAFMTVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
NLLWGEDQPILDRRQLVGPLVLYVANFAFALLMSLGSGIAAPAGLGLLLGLGPALGLWWS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCEEEC
AETPSPYRDQPVPPSHPEQDSIPLLQTVEGEAGRDWDTLEDPGWVGAK
CCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWFSSSGVLVSLPFQSSVGRSVLPLSGSIWQRLEALALGLHILSLLFGLAGLLWVVPHP
CCEECCCCEEEEECCHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EWVASLPPIGIQAFSLSMGNGGVAYMVFGALAAALMGSRLLGVRRLLMFLIPAVGISLGS
HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLGTSTGIPFGNYGYLSGLGYKIAGLVPFTIPLSWFYVGLSSYLLARVALQTQRHWLIH
HHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEAIMLGALLLTAWDFVLDPAMTRGLIPFWTWFQPGPFFGMPLQNFGGWMLTGAAFMTVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
NLLWGEDQPILDRRQLVGPLVLYVANFAFALLMSLGSGIAAPAGLGLLLGLGPALGLWWS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCEEEC
AETPSPYRDQPVPPSHPEQDSIPLLQTVEGEAGRDWDTLEDPGWVGAK
CCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA