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The map label for this gene is ydcM [C]

Identifier: 86608023

GI number: 86608023

Start: 544793

End: 546037

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0530

Alternate gene names: 86608023

Gene position: 544793-546037 (Clockwise)

Preceding gene: 86608021

Following gene: 86608028

Centisome position: 17.88

GC content: 53.41

Gene sequence:

>1245_bases
ATGAGGACTGCCTATCAGTACCGCCTGCGGCCTACGCCCAGTCAAGTTGTCCTGATGGAGCAATGGCTGGAGCTGTTGCG
CAAGCAGTACAACTATCGGTTGGCAGAGCGGCTTAACTGGTGGGAACAAAACCGCTGTAATATAAACGCCTGCCCCTTAA
TCTGTCATTTGCCTGAGCTGAAAGACAGGCCGGATGTCTACTCCCAAAAACGAGACTTGGTGAATACCAAAGTAAGGTTC
CCCGAATACCAAGCAATCCATTCGCAAGTCCTGCAAAACTGCATAGAGCGGGTGCACAAAGCATTCGACCGCTGGCTGAA
AGGCGACCGTAACGGCAAGAGGGCAGGAAGGCCGAGATTCAAAGGGGCGGGCCGGTATCGTTCCTTCACCTTTCCCCAGA
TGAAGCAGGACTGCATTCAAGGGAAGTTTATTCATCTGCCCAAAATCGGAGCAATTAAGCTGATTCAGCACCGTCCGTTG
CCTGACGGGTTTGTTATCAAGACTGCCACCATCACCCGTAAGGCTGATGGATGGTATGTGACATTAAGCCTGCAAGATGC
GTCCGTCCCCGAGTTTGCTCCTGAGCCTGCAACACTGGAGAACACGATAGGGATCGACATGGGGCTGGACTCCTTTTTGG
TGACTGATACAGGGGAGTCCGTCCCAGTGCCCCAGTATTACCGCCGCGCCCAAAAGCGCCTGGAGAGGCTGCAGCGGTCA
TTATCCCGTAAGCAGAAAGGGTCAAACCGCCGCAAGAAAGCCTTAGGGCGAGTGGCTAAGGCACACCTCAAGGTGGCCAA
TCAGCGTAAAGATTTCCACTACAAAGTAGCCAAGAAGCTAGTAAGCAAAGGGAAGCATATTGCGTATGAGGCGCTCAACA
CCAAAGGTATTGCGAGAACCCGACTAGCGAAATCCATCTATGACGCTGGGTGGGGGCAATTCCTGCAAATTCTCGCAGTC
AAGGCTGAAAGAGCTGGGCTGAGGGCGATTGCAGTGGATCCAAGAGGCACGAGCCAAGACTGTTCTCAGTGCGGTCAAAA
AGTACCGAAAACCATTCGAGACAGATGGCATTCTTGCCCGCATTGTGGACTGGAACTAGGCCGAGACCACAACGCGGCGA
TAAACATCAAATACAGAGCGGTGGGGCATCCCGTTCTCAAAGCTCAGGAAACGTCCTTCACAGGAGTCACTGAGAAGCCC
GCACTCTTTCGCTTTAGCGGCGCGGAGCGCTTTGCGTCAGCATGA

Upstream 100 bases:

>100_bases
AATCAGATACAGCTCTGCCGCTGGAAACAAAATCATGCTTCATGGTCGCTAATCCCTGCTGGCGCTATAATCAGTGTAGC
GGTTTCTGAGTACGCTTAAG

Downstream 100 bases:

>100_bases
GTGCGGGAGTATGTCACACCGCAAAATAGGCTACGGTTTCTAGCGGCAGAGCAACTGGCGCAATTGCGGGGGTTTTGATC
TTCGGCCCAGGCTACTCCTC

Product: ISSoc10, orfB transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MRTAYQYRLRPTPSQVVLMEQWLELLRKQYNYRLAERLNWWEQNRCNINACPLICHLPELKDRPDVYSQKRDLVNTKVRF
PEYQAIHSQVLQNCIERVHKAFDRWLKGDRNGKRAGRPRFKGAGRYRSFTFPQMKQDCIQGKFIHLPKIGAIKLIQHRPL
PDGFVIKTATITRKADGWYVTLSLQDASVPEFAPEPATLENTIGIDMGLDSFLVTDTGESVPVPQYYRRAQKRLERLQRS
LSRKQKGSNRRKKALGRVAKAHLKVANQRKDFHYKVAKKLVSKGKHIAYEALNTKGIARTRLAKSIYDAGWGQFLQILAV
KAERAGLRAIAVDPRGTSQDCSQCGQKVPKTIRDRWHSCPHCGLELGRDHNAAINIKYRAVGHPVLKAQETSFTGVTEKP
ALFRFSGAERFASA

Sequences:

>Translated_414_residues
MRTAYQYRLRPTPSQVVLMEQWLELLRKQYNYRLAERLNWWEQNRCNINACPLICHLPELKDRPDVYSQKRDLVNTKVRF
PEYQAIHSQVLQNCIERVHKAFDRWLKGDRNGKRAGRPRFKGAGRYRSFTFPQMKQDCIQGKFIHLPKIGAIKLIQHRPL
PDGFVIKTATITRKADGWYVTLSLQDASVPEFAPEPATLENTIGIDMGLDSFLVTDTGESVPVPQYYRRAQKRLERLQRS
LSRKQKGSNRRKKALGRVAKAHLKVANQRKDFHYKVAKKLVSKGKHIAYEALNTKGIARTRLAKSIYDAGWGQFLQILAV
KAERAGLRAIAVDPRGTSQDCSQCGQKVPKTIRDRWHSCPHCGLELGRDHNAAINIKYRAVGHPVLKAQETSFTGVTEKP
ALFRFSGAERFASA
>Mature_414_residues
MRTAYQYRLRPTPSQVVLMEQWLELLRKQYNYRLAERLNWWEQNRCNINACPLICHLPELKDRPDVYSQKRDLVNTKVRF
PEYQAIHSQVLQNCIERVHKAFDRWLKGDRNGKRAGRPRFKGAGRYRSFTFPQMKQDCIQGKFIHLPKIGAIKLIQHRPL
PDGFVIKTATITRKADGWYVTLSLQDASVPEFAPEPATLENTIGIDMGLDSFLVTDTGESVPVPQYYRRAQKRLERLQRS
LSRKQKGSNRRKKALGRVAKAHLKVANQRKDFHYKVAKKLVSKGKHIAYEALNTKGIARTRLAKSIYDAGWGQFLQILAV
KAERAGLRAIAVDPRGTSQDCSQCGQKVPKTIRDRWHSCPHCGLELGRDHNAAINIKYRAVGHPVLKAQETSFTGVTEKP
ALFRFSGAERFASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=325, Percent_Identity=28.3076923076923, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 47457; Mature: 47457

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS00028 ZINC_FINGER_C2H2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAYQYRLRPTPSQVVLMEQWLELLRKQYNYRLAERLNWWEQNRCNINACPLICHLPEL
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCCCCCCCCCEEEECCCC
KDRPDVYSQKRDLVNTKVRFPEYQAIHSQVLQNCIERVHKAFDRWLKGDRNGKRAGRPRF
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KGAGRYRSFTFPQMKQDCIQGKFIHLPKIGAIKLIQHRPLPDGFVIKTATITRKADGWYV
CCCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCEEE
TLSLQDASVPEFAPEPATLENTIGIDMGLDSFLVTDTGESVPVPQYYRRAQKRLERLQRS
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LSRKQKGSNRRKKALGRVAKAHLKVANQRKDFHYKVAKKLVSKGKHIAYEALNTKGIART
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEHHHCCCCHHHH
RLAKSIYDAGWGQFLQILAVKAERAGLRAIAVDPRGTSQDCSQCGQKVPKTIRDRWHSCP
HHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
HCGLELGRDHNAAINIKYRAVGHPVLKAQETSFTGVTEKPALFRFSGAERFASA
CCCHHCCCCCCCEEEEEEEECCCCHHEECCCCCCCCCCCCCEEEECCHHHHCCC
>Mature Secondary Structure
MRTAYQYRLRPTPSQVVLMEQWLELLRKQYNYRLAERLNWWEQNRCNINACPLICHLPEL
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCCCCCCCCCEEEECCCC
KDRPDVYSQKRDLVNTKVRFPEYQAIHSQVLQNCIERVHKAFDRWLKGDRNGKRAGRPRF
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KGAGRYRSFTFPQMKQDCIQGKFIHLPKIGAIKLIQHRPLPDGFVIKTATITRKADGWYV
CCCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCEEE
TLSLQDASVPEFAPEPATLENTIGIDMGLDSFLVTDTGESVPVPQYYRRAQKRLERLQRS
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LSRKQKGSNRRKKALGRVAKAHLKVANQRKDFHYKVAKKLVSKGKHIAYEALNTKGIART
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEHHHCCCCHHHH
RLAKSIYDAGWGQFLQILAVKAERAGLRAIAVDPRGTSQDCSQCGQKVPKTIRDRWHSCP
HHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
HCGLELGRDHNAAINIKYRAVGHPVLKAQETSFTGVTEKPALFRFSGAERFASA
CCCHHCCCCCCCEEEEEEEECCCCHHEECCCCCCCCCCCCCEEEECCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]