The gene/protein map for NC_009525 is currently unavailable.
Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86607717

Identifier: 86607717

GI number: 86607717

Start: 229471

End: 231006

Strand: Reverse

Name: 86607717

Synonym: CYB_0218

Alternate gene names: NA

Gene position: 231006-229471 (Counterclockwise)

Preceding gene: 86607718

Following gene: 86607716

Centisome position: 7.58

GC content: 60.87

Gene sequence:

>1536_bases
ATGGCAGATTGGATCCTGTTGGCGCTGGTGGGTTCTGCAACCTACCTGCTGCTGCAAAAAAGTGTGGCCCGCCTCTCAAA
GGTGCCGTGGCGGATCCTGTGGCTGGTGATGATGCTGCCCCCTTTGGTTTGGGTGCTGGGGCGTCAGGTGTTTCAGTACG
AATTGCCTCCCTTGCTGATGTTGCTGCTGTTTCTCACCTCCTACTTTACCAGCATGACCTTGGTGAGACGAGGGGGTATT
CGACCCTCAACCGGAGGCCCTCGGCCAGAGGTGGAAAACTCCTCTCCAGAAGCGGATCCCTCGCCGGCTGGGGAACCTGA
GCCAGAGGAAGAGGAGGAAGACGGCGCCGCAGATCCGGTCTCGCTGGCTCTTGCCCACACCCCCATCTCCGAAGTGCCGC
GGGAGAAGCTGAGCCATTGCTTCCCCTGGAACGTCTTTTATTTGCAAAATGTGGAGTACCGCCCCCAGGCGATCATCTGC
CGGGGCAACTTGCGGGCGGATCCCAGTGAAGCCTATGAGCGGGTGCAGCAAAACGTGGAAACCACTTTCGGCAAACGCTT
TTTGGTGGTGCTGCAGGAGGGGTTTGCCGGTAAGCCCTTTTTTGCCTTGGTGCCCAACCCGGCGGCGCGGCGCTCCCCGG
CGGACAGTCGAGAGTTGCCGCTGCTGGCTTTGGGGCTGTTGCTATTCACCTTCTGGACAACCCTCAGTGCTGGGGCCCAC
GCGGCTGGGGTTAGCCCTGACCGGCTGCTGCATTTGCCCTCTCTGATGAAAGGATTGCCCTATGCGGTCGGGATCCTTGC
CATTTTGGGATCCCATGAGTGGACTCGTTACTGGGTGGCCCGCCGCCACCACATCAAAACCTCGCTGCCCTATTTCATCC
CGGTGCCTTTTGTCCTAGGGACTTTTGGGGCGTTTATCCAGTTGAAAGAGCCGGTGCCCAACCGCAAGGTGTTGTTTGAT
ATCGCCGCCGCTGGGCCGCTGGCAGGGAGTCTTGTTGCTTTGGGCATGCTGTTGCTGGGGCTGTTGTTTTCAGCGCCTGC
AGATCCTCCCGCGGTGCCGGAGGGGCAGCCGACCCCGATTAGTTTTCATCGCATTGACCCGCGCCTATCGGTGCTGCTGG
CAATTCTGGCCCGCATGGTGCTGGGGGATCAGTTGCAGCCGGGGCAGGTGATCGAGCTGCACCCGCTGGCCTTTGCCGGC
TGGCTGGGCTTGGTGGTGATTGCCTTTAACCTCATGCCGGTGGGCCAACTGGATGGAGGGCACATTGTCCACGCAGTGTA
TGGACAGCAGATGGGAGCGAATGTAGGCCGGGTAGCCCGCTGGTTGGTGCTGCTGCTGGCCTTGACGGTGCAGCCTTGGC
TGTTGCTCTGGGCGCTGCTGCTGTTTGTGATTTCCAGTGCCGACGAGCCGGCCCTCAACGATGTGACGGAACTGGACGAG
GCCCGAGATCTGCTGGGGCTGGGGATGCTCACGCTGCTGGTGCTGATCCTGCTGCCGGTGCCGCCGTTTTTGCAAAATGG
GCTGGGCTTGGCCTAG

Upstream 100 bases:

>100_bases
GCCTCAATTGGCTCTTCAGGGATCCCGGCTGCAAGCTGTAGCGAGGGGATTGGATTTGCCGCTAGCTTGGTAGAGGTGTT
CTCCTCCGTTTTTTGAACTC

Downstream 100 bases:

>100_bases
ATCCGGGGTAGGATCCAAACCGCCCCTGACCTCGTTCTTCTCTCATGGAACGCAGCTTAATCGTTCAAAAGTACGGCGGT
ACCTCTGTCGGCTCTGTCGA

Product: M50B family peptidase

Products: NA

Alternate protein names: Peptidase; Membrane-Associated Zn-Dependent Protease; M50 Family Peptidase; Metalloprotease; Zinc Metalloprotease; Zinc Protease; Membrane-Associated Metallopeptidase; M50B Family Peptidase; Membrane Associated Metalloprotease; M50 Family Metallopeptidase; S2P Family Metalloprotease; Integral Membrane Protease

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLMLLLFLTSYFTSMTLVRRGGI
RPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPVSLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIIC
RGNLRADPSEAYERVQQNVETTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH
AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLGTFGAFIQLKEPVPNRKVLFD
IAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPISFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAG
WLGLVVIAFNLMPVGQLDGGHIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE
ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA

Sequences:

>Translated_511_residues
MADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLMLLLFLTSYFTSMTLVRRGGI
RPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPVSLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIIC
RGNLRADPSEAYERVQQNVETTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH
AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLGTFGAFIQLKEPVPNRKVLFD
IAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPISFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAG
WLGLVVIAFNLMPVGQLDGGHIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE
ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA
>Mature_510_residues
ADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLMLLLFLTSYFTSMTLVRRGGIR
PSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPVSLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIICR
GNLRADPSEAYERVQQNVETTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAHA
AGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLGTFGAFIQLKEPVPNRKVLFDI
AAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPISFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAGW
LGLVVIAFNLMPVGQLDGGHIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDEA
RDLLGLGMLTLLVLILLPVPPFLQNGLGLA

Specific function: Unknown

COG id: COG0750

COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55949; Mature: 55817

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLM
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LLLFLTSYFTSMTLVRRGGIRPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
SLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIICRGNLRADPSEAYERVQQNVE
HHHEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
TTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH
HHHHHHEEEHHHCCCCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLG
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TFGAFIQLKEPVPNRKVLFDIAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPI
HHHHHEEECCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
SFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAGWLGLVVIAFNLMPVGQLDGG
EHEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCC
HIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE
CEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
>Mature Secondary Structure 
ADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLM
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LLLFLTSYFTSMTLVRRGGIRPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
SLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIICRGNLRADPSEAYERVQQNVE
HHHEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
TTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH
HHHHHHEEEHHHCCCCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLG
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TFGAFIQLKEPVPNRKVLFDIAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPI
HHHHHEEECCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
SFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAGWLGLVVIAFNLMPVGQLDGG
EHEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCC
HIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE
CEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA