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The map label for this gene is rbfA

Identifier: 86607701

GI number: 86607701

Start: 212012

End: 212446

Strand: Reverse

Name: rbfA

Synonym: CYB_0200

Alternate gene names: 86607701

Gene position: 212446-212012 (Counterclockwise)

Preceding gene: 86607704

Following gene: 86607700

Centisome position: 6.97

GC content: 58.39

Gene sequence:

>435_bases
ATGGCGACAGCGCGACGGGTGGCACGGGTAGCAGAGCTGATCAAACGAGAGGTCAGCCAAATCCTGCTCTCGGAGATCAA
AGATGACCGGGTTGGGGCAGGGATGGTCAGCATTGTGGATGTCGAGGTTTCCAATGACCTGCAAAACGCCCGCATCTTCG
TCAGCATTTATGGGGATGAGACAGCTCAACACCAAGCTATGGAAGGGCTAGCAGCGGCCACACCCTTTGTGCGGCGGGAA
ATCGGCCAGCGCCTCAGCCTGCGACGGGTGCCAACGGTGGTGTTTTTGCAGGATCGCTCTTTGGAGCGGGGATCCCGCGT
TTTGGCTCTGCTTAACCAACTGAGACCGACCTTTGAGGCCAAGGCCCAGACTGGGGTTGAGGAACCGCTAGAGAACACCG
CCGAGGGCGAAGAAAACCCATCGGGCGGTGAATAA

Upstream 100 bases:

>100_bases
TCGTAGCATTGGCTACTGTTCTTGGGATCGAGCCGGCAAGGGCTGAGCTCCACACCAGCCAGAGCAGGCTTGCGGATGAT
GTTAGCCTAGGTATCCAAAA

Downstream 100 bases:

>100_bases
TTGCACCGATGGCTAAGCAGACCAGATAGAGAGGCCTTTGCTTTGCAGCAATGCGGACAACATCCAAGAAAAGTTTTTGA
CGTTCGCGTAAGCGGGCCGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDETAQHQAMEGLAAATPFVRRE
IGQRLSLRRVPTVVFLQDRSLERGSRVLALLNQLRPTFEAKAQTGVEEPLENTAEGEENPSGGE

Sequences:

>Translated_144_residues
MATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDETAQHQAMEGLAAATPFVRRE
IGQRLSLRRVPTVVFLQDRSLERGSRVLALLNQLRPTFEAKAQTGVEEPLENTAEGEENPSGGE
>Mature_143_residues
ATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDETAQHQAMEGLAAATPFVRREI
GQRLSLRRVPTVVFLQDRSLERGSRVLALLNQLRPTFEAKAQTGVEEPLENTAEGEENPSGGE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=36.036036036036, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SYNJB (Q2JPS6)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_476463.1
- ProteinModelPortal:   Q2JPS6
- SMR:   Q2JPS6
- STRING:   Q2JPS6
- GeneID:   3902241
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_0200
- TIGR:   CYB_0200
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   GHAKIFM
- PhylomeDB:   Q2JPS6
- ProtClustDB:   PRK00521
- BioCyc:   SSP321332:CYB_0200-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15857; Mature: 15726

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCC
TAQHQAMEGLAAATPFVRREIGQRLSLRRVPTVVFLQDRSLERGSRVLALLNQLRPTFEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCHHHHH
KAQTGVEEPLENTAEGEENPSGGE
HHHCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ATARRVARVAELIKREVSQILLSEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCC
TAQHQAMEGLAAATPFVRREIGQRLSLRRVPTVVFLQDRSLERGSRVLALLNQLRPTFEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCHHHHH
KAQTGVEEPLENTAEGEENPSGGE
HHHCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA