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The map label for this gene is apcD [H]

Identifier: 86607687

GI number: 86607687

Start: 199111

End: 199596

Strand: Reverse

Name: apcD [H]

Synonym: CYB_0186

Alternate gene names: 86607687

Gene position: 199596-199111 (Counterclockwise)

Preceding gene: 86607688

Following gene: 86607685

Centisome position: 6.55

GC content: 54.32

Gene sequence:

>486_bases
GTGAGCGTGATCAACCAGATCATCGAGACCGCGGATGACCAGCTGCGTTACCTCTCAGTTAGCGAACTGGAAGCCATCAG
GAATTACATGACCACCGGCGAGAGGCGCTTGCAAATCGCTCAGGTGTTAGCAGAAAACAAAAAGCGCATCATTGACCAGG
CCCAGAAGCAGCTATTCGCCAAGCGGCCCGAGTACGTGCAACCCGGTGGCAATGCCTACGGTGACAAGCGCTACAACCAA
TGTTTGCGAGATTACGACTGGTATCTGCGTCTGGTGACCTATGGCATTATTGCCGGCAGCAAAGAGCCGATTGAGTCTAT
CGGCCTGATAGGGGTGCGGGAAATGTACAATGCCCTCAACGTACCCATCGCCGGCATGATCGATGCGATTGTCTTTTTGA
AGGAAGCTGCCCTCAGCTTGTTGGAGCCGGCGGCAGCCGCTGAAGCCGCCCCTTACTTTGACTACATCATCAATGCCATG
AGCTAG

Upstream 100 bases:

>100_bases
GCTACCTGCTCATCTCTTGGGCCGACCTTGGGCTGGGGGGATGGGTTGCGAATTGATGAACCGAATTGAAAGCAAGTTAG
AAAACAGGAGAATCCCTACC

Downstream 100 bases:

>100_bases
GGATCTACAGGGATCCCAAGGCAGCCCGGGCATGTACGGCCACCTGTTCTTGGGAATCCTGGGCCAGCCGGGTCAGTCCG
GCGCGAGCGGCTTCTGTTCC

Product: allophycocyanin alpha, B subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSVINQIIETADDQLRYLSVSELEAIRNYMTTGERRLQIAQVLAENKKRIIDQAQKQLFAKRPEYVQPGGNAYGDKRYNQ
CLRDYDWYLRLVTYGIIAGSKEPIESIGLIGVREMYNALNVPIAGMIDAIVFLKEAALSLLEPAAAAEAAPYFDYIINAM
S

Sequences:

>Translated_161_residues
MSVINQIIETADDQLRYLSVSELEAIRNYMTTGERRLQIAQVLAENKKRIIDQAQKQLFAKRPEYVQPGGNAYGDKRYNQ
CLRDYDWYLRLVTYGIIAGSKEPIESIGLIGVREMYNALNVPIAGMIDAIVFLKEAALSLLEPAAAAEAAPYFDYIINAM
S
>Mature_160_residues
SVINQIIETADDQLRYLSVSELEAIRNYMTTGERRLQIAQVLAENKKRIIDQAQKQLFAKRPEYVQPGGNAYGDKRYNQC
LRDYDWYLRLVTYGIIAGSKEPIESIGLIGVREMYNALNVPIAGMIDAIVFLKEAALSLLEPAAAAEAAPYFDYIINAMS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 654 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18141; Mature: 18010

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVINQIIETADDQLRYLSVSELEAIRNYMTTGERRLQIAQVLAENKKRIIDQAQKQLFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPEYVQPGGNAYGDKRYNQCLRDYDWYLRLVTYGIIAGSKEPIESIGLIGVREMYNALN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
VPIAGMIDAIVFLKEAALSLLEPAAAAEAAPYFDYIINAMS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVINQIIETADDQLRYLSVSELEAIRNYMTTGERRLQIAQVLAENKKRIIDQAQKQLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPEYVQPGGNAYGDKRYNQCLRDYDWYLRLVTYGIIAGSKEPIESIGLIGVREMYNALN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
VPIAGMIDAIVFLKEAALSLLEPAAAAEAAPYFDYIINAMS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]