| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607674
Identifier: 86607674
GI number: 86607674
Start: 184891
End: 186201
Strand: Reverse
Name: 86607674
Synonym: CYB_0172
Alternate gene names: NA
Gene position: 186201-184891 (Counterclockwise)
Preceding gene: 86607675
Following gene: 86607672
Centisome position: 6.11
GC content: 52.33
Gene sequence:
>1311_bases GTGGGTGTATCTTATCGCAGGTCTAACAGGGCAAAAGCCGTCCTGGAAGGGCGGGGCTTCAGGCCTAGCTTCTTGGTAAA GTTTGGAACTGCCCGCATTCGGGATTGCCTTAAACTTCTCTTAAATCCTGTTTCACAGGTAACTGCTAGCATGAGGCCAA CTTCACTCCCACCCCCGGAAAGGAAGGCCTTTATGAACTGGCTGATGCTGCTTGGTCTGCTTTGTCTTCCTGCCTCTCTG TTTTCGTTTGTTGAGTATTTGCGCTCCCAAAGGTTGGTTCAACAGCTCTCTGCAACTCGGTTGCTCAAGATAGCCGAGCT TCGCCATCTCGGTCAGACCAACCCCCAGGCAAAAGGAGCAAACTTGGCTCAAGTTTACGGCAGGGTTGTGTGCGATCGGC CTTTGGTATCGGAACTTTCGCGACAGCCTTGCGTCTACTACAAGTCTGAGATCTCTTGGGAGTATGACGAGATCGAATGC TATCGAAGGTATTTGAATAGCCGAGGCGATGTAGCGTATAGCGAACGGATCAGCGAAGGCGAATATCAGAACGCTCTACG CTTGGGATCCCGAGCAAAATCCTATCCGGGGGAGATGGTCGGGAAAAAGCCCGGCTTGGGCTACTCTGACTCCGGTTCTT TTCAGAAAAGGGTTGATCCCGACTACTCTAATTCTTTTCCACAAAAGCCCAACCCTGGCTACCCCCAGCAGCTTGGCTCT CCAGGCTATCCTCAAAAATCGCCGTTTTCCGAAGTAAGCTCTCCCCAAAAACACTACGCCAACGTGTATTACGATCCGAG CACAGGTCGGGAATATCTCCTTGAAAGAGAGACGAGAACGAGAGACGAAACCCTTCACTCGGTGGTTCGCCAGATCCCTT TTTTCATCGAAGACGAAACTGGAAGGGTGAGGGTGGATCCCACAGGTGCGGAGATAGAGGCTATGTCGGTTGTGGATGAG CATATTTTTCCAGGAAAAGGGCCCAGCCGGTTCAACTTCAATCTCAAGCGCTACCTTTCCGGAGTGAGAACAGAAAATCG CTCCACCCGAGCTTTTATCTATAAGGAATGGGTGATTCCGGTGGATGCGATGGCGTTTACCATGGGGCAGGTGCGTTTTG AGGCAGGGGATCCCGTGATCCGAAAACCCCTTTCTGGGGAAAGGTTTATGATTGCCCCCAAATCCCCTGAAGCCCTCTTG GAAGAGCAGCGCTCCAATGCCAGCAGCTACCTGGTGGGATCCGTCGTCCTGCTGGGTATCGGCATTTTCACCGTGCTCCA CCTGCTGCAATCCCTGCAGCCTTATCGCTAG
Upstream 100 bases:
>100_bases TCGCCCACATCCAGCCCCACCACCTGGCCGGTGTACTCTGTCATCCAAGGCTTGGTACTGCGCTGGAGTGGCGTTGAGGA GTTTGGCTTCTCTGACCAGC
Downstream 100 bases:
>100_bases TTCCTGCCCAGGCAGAGGGAAGCCTACTGCCACTCACAACGACAAACCCAGCTTGAGCCCAAGCAGGGCATGGGCAAACA GTACACATAGAATGAGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MGVSYRRSNRAKAVLEGRGFRPSFLVKFGTARIRDCLKLLLNPVSQVTASMRPTSLPPPERKAFMNWLMLLGLLCLPASL FSFVEYLRSQRLVQQLSATRLLKIAELRHLGQTNPQAKGANLAQVYGRVVCDRPLVSELSRQPCVYYKSEISWEYDEIEC YRRYLNSRGDVAYSERISEGEYQNALRLGSRAKSYPGEMVGKKPGLGYSDSGSFQKRVDPDYSNSFPQKPNPGYPQQLGS PGYPQKSPFSEVSSPQKHYANVYYDPSTGREYLLERETRTRDETLHSVVRQIPFFIEDETGRVRVDPTGAEIEAMSVVDE HIFPGKGPSRFNFNLKRYLSGVRTENRSTRAFIYKEWVIPVDAMAFTMGQVRFEAGDPVIRKPLSGERFMIAPKSPEALL EEQRSNASSYLVGSVVLLGIGIFTVLHLLQSLQPYR
Sequences:
>Translated_436_residues MGVSYRRSNRAKAVLEGRGFRPSFLVKFGTARIRDCLKLLLNPVSQVTASMRPTSLPPPERKAFMNWLMLLGLLCLPASL FSFVEYLRSQRLVQQLSATRLLKIAELRHLGQTNPQAKGANLAQVYGRVVCDRPLVSELSRQPCVYYKSEISWEYDEIEC YRRYLNSRGDVAYSERISEGEYQNALRLGSRAKSYPGEMVGKKPGLGYSDSGSFQKRVDPDYSNSFPQKPNPGYPQQLGS PGYPQKSPFSEVSSPQKHYANVYYDPSTGREYLLERETRTRDETLHSVVRQIPFFIEDETGRVRVDPTGAEIEAMSVVDE HIFPGKGPSRFNFNLKRYLSGVRTENRSTRAFIYKEWVIPVDAMAFTMGQVRFEAGDPVIRKPLSGERFMIAPKSPEALL EEQRSNASSYLVGSVVLLGIGIFTVLHLLQSLQPYR >Mature_435_residues GVSYRRSNRAKAVLEGRGFRPSFLVKFGTARIRDCLKLLLNPVSQVTASMRPTSLPPPERKAFMNWLMLLGLLCLPASLF SFVEYLRSQRLVQQLSATRLLKIAELRHLGQTNPQAKGANLAQVYGRVVCDRPLVSELSRQPCVYYKSEISWEYDEIECY RRYLNSRGDVAYSERISEGEYQNALRLGSRAKSYPGEMVGKKPGLGYSDSGSFQKRVDPDYSNSFPQKPNPGYPQQLGSP GYPQKSPFSEVSSPQKHYANVYYDPSTGREYLLERETRTRDETLHSVVRQIPFFIEDETGRVRVDPTGAEIEAMSVVDEH IFPGKGPSRFNFNLKRYLSGVRTENRSTRAFIYKEWVIPVDAMAFTMGQVRFEAGDPVIRKPLSGERFMIAPKSPEALLE EQRSNASSYLVGSVVLLGIGIFTVLHLLQSLQPYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49441; Mature: 49310
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVSYRRSNRAKAVLEGRGFRPSFLVKFGTARIRDCLKLLLNPVSQVTASMRPTSLPPPE CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RKAFMNWLMLLGLLCLPASLFSFVEYLRSQRLVQQLSATRLLKIAELRHLGQTNPQAKGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NLAQVYGRVVCDRPLVSELSRQPCVYYKSEISWEYDEIECYRRYLNSRGDVAYSERISEG HHHHHHHHHHCCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCC EYQNALRLGSRAKSYPGEMVGKKPGLGYSDSGSFQKRVDPDYSNSFPQKPNPGYPQQLGS HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCC PGYPQKSPFSEVSSPQKHYANVYYDPSTGREYLLERETRTRDETLHSVVRQIPFFIEDET CCCCCCCCHHHHCCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC GRVRVDPTGAEIEAMSVVDEHIFPGKGPSRFNFNLKRYLSGVRTENRSTRAFIYKEWVIP CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCC VDAMAFTMGQVRFEAGDPVIRKPLSGERFMIAPKSPEALLEEQRSNASSYLVGSVVLLGI HHHHHHHHHHEEECCCCHHHCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHH GIFTVLHLLQSLQPYR HHHHHHHHHHHCCCCC >Mature Secondary Structure GVSYRRSNRAKAVLEGRGFRPSFLVKFGTARIRDCLKLLLNPVSQVTASMRPTSLPPPE CCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RKAFMNWLMLLGLLCLPASLFSFVEYLRSQRLVQQLSATRLLKIAELRHLGQTNPQAKGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NLAQVYGRVVCDRPLVSELSRQPCVYYKSEISWEYDEIECYRRYLNSRGDVAYSERISEG HHHHHHHHHHCCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCC EYQNALRLGSRAKSYPGEMVGKKPGLGYSDSGSFQKRVDPDYSNSFPQKPNPGYPQQLGS HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCC PGYPQKSPFSEVSSPQKHYANVYYDPSTGREYLLERETRTRDETLHSVVRQIPFFIEDET CCCCCCCCHHHHCCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC GRVRVDPTGAEIEAMSVVDEHIFPGKGPSRFNFNLKRYLSGVRTENRSTRAFIYKEWVIP CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCC VDAMAFTMGQVRFEAGDPVIRKPLSGERFMIAPKSPEALLEEQRSNASSYLVGSVVLLGI HHHHHHHHHHEEECCCCHHHCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHH GIFTVLHLLQSLQPYR HHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA