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The map label for this gene is opuBB [H]

Identifier: 86607531

GI number: 86607531

Start: 37665

End: 38306

Strand: Reverse

Name: opuBB [H]

Synonym: CYB_0029

Alternate gene names: 86607531

Gene position: 38306-37665 (Counterclockwise)

Preceding gene: 86607532

Following gene: 86607530

Centisome position: 1.26

GC content: 59.66

Gene sequence:

>642_bases
ATGAGCCTTTTGGCCCGCTCCCTGGCCTACGCCCAGAACCACAGCGACATGCTGTTTCAAGCTTTCGTCCAACACCTGCA
ACTGGTGGCGGTGCCTTTGGGAATGGGGCTGCTGTTGGGTTTGCCGCTGGGCTTTTTCAGCTCCCGCTCCCAGATGCTTT
CTCTGGTGGTGATCAATGCGTTCAGCAGCCTGCGGGTGATCCCCAGTTTGGCCATTTTGTTTTTGGCCATCCCCTATTTC
GGCCTCAGCTTCCGTTCGGCAGTCGTCGCGCTAACCCTCCTGGCTTTGCCCCCCATTCTGATCAGCACGGATGTGGCCTT
CCGCAGCCTTGAGCCGGCCCTACGGGAAGCTGCCCTGAGCATGGGCATGACTCCTGGCCAGGTACTGCGGCACGTGGAGA
TCCCTTTGGCCTTGCCGGTGATCTTGGCCGGTGTTAAAACGGCTACCATTGAGGTGATTGCCAGTGCTACTCTGGCAGCG
TTTATCGGCGCAGGAGGGCTGGGTACTTTCATTACCCTAGGGTTTGCCCTCTACGACAACGCCATCTTGCTGGTGGGGGC
GGTTCCAGTGGCCCTTCTGGCTATTGCGGCCGAGATCGGCCTTGGCACTCTGCAGCGGGCTTTGGAACCTCCCCAAGCCT
GA

Upstream 100 bases:

>100_bases
GTGCTAAATCCCCGCTCTGCACTATTCCGCACTGTCAAGATCGCCTGCCGGCGCTACACTGGGGCTTGTCTTGGATCCCT
CGGTCATCTGCGCACCTTTG

Downstream 100 bases:

>100_bases
GGTTCTGTGAGGGATCCCATGCTGTTTTTCTCTGGTTCTTCTGAAGTGCGATCCCGTTGGCCTTTCCGCTCCATTCCTTT
GCGGGTGGCGTTGCTGCTGC

Product: quaternary amine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSLLARSLAYAQNHSDMLFQAFVQHLQLVAVPLGMGLLLGLPLGFFSSRSQMLSLVVINAFSSLRVIPSLAILFLAIPYF
GLSFRSAVVALTLLALPPILISTDVAFRSLEPALREAALSMGMTPGQVLRHVEIPLALPVILAGVKTATIEVIASATLAA
FIGAGGLGTFITLGFALYDNAILLVGAVPVALLAIAAEIGLGTLQRALEPPQA

Sequences:

>Translated_213_residues
MSLLARSLAYAQNHSDMLFQAFVQHLQLVAVPLGMGLLLGLPLGFFSSRSQMLSLVVINAFSSLRVIPSLAILFLAIPYF
GLSFRSAVVALTLLALPPILISTDVAFRSLEPALREAALSMGMTPGQVLRHVEIPLALPVILAGVKTATIEVIASATLAA
FIGAGGLGTFITLGFALYDNAILLVGAVPVALLAIAAEIGLGTLQRALEPPQA
>Mature_212_residues
SLLARSLAYAQNHSDMLFQAFVQHLQLVAVPLGMGLLLGLPLGFFSSRSQMLSLVVINAFSSLRVIPSLAILFLAIPYFG
LSFRSAVVALTLLALPPILISTDVAFRSLEPALREAALSMGMTPGQVLRHVEIPLALPVILAGVKTATIEVIASATLAAF
IGAGGLGTFITLGFALYDNAILLVGAVPVALLAIAAEIGLGTLQRALEPPQA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=134, Percent_Identity=41.044776119403, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788451, Length=202, Percent_Identity=29.2079207920792, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789033, Length=159, Percent_Identity=31.4465408805031, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22226; Mature: 22095

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLARSLAYAQNHSDMLFQAFVQHLQLVAVPLGMGLLLGLPLGFFSSRSQMLSLVVINA
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FSSLRVIPSLAILFLAIPYFGLSFRSAVVALTLLALPPILISTDVAFRSLEPALREAALS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MGMTPGQVLRHVEIPLALPVILAGVKTATIEVIASATLAAFIGAGGLGTFITLGFALYDN
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
AILLVGAVPVALLAIAAEIGLGTLQRALEPPQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SLLARSLAYAQNHSDMLFQAFVQHLQLVAVPLGMGLLLGLPLGFFSSRSQMLSLVVINA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FSSLRVIPSLAILFLAIPYFGLSFRSAVVALTLLALPPILISTDVAFRSLEPALREAALS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
MGMTPGQVLRHVEIPLALPVILAGVKTATIEVIASATLAAFIGAGGLGTFITLGFALYDN
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
AILLVGAVPVALLAIAAEIGLGTLQRALEPPQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]