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The map label for this gene is araQ [H]

Identifier: 86361021

GI number: 86361021

Start: 324177

End: 325223

Strand: Reverse

Name: araQ [H]

Synonym: RHE_PF00291

Alternate gene names: 86361021

Gene position: 325223-324177 (Counterclockwise)

Preceding gene: 86361022

Following gene: 86361019

Centisome position: 50.62

GC content: 60.74

Gene sequence:

>1047_bases
ATGAGCCCGATCAGTTTTCTCTCACGCACACGCCGGGCCGGGCGCATCGATATTACCGACGTTTTGTCCTGGGTCTGGTT
GATCGGCGGAACGCTAGCCGTGCTCATTCCCGTCCTCTGGGCAGGCCTTTCCTCACTGAAGCCCGCGGCCGAGATCACCC
GCTTTCCACCGTCGCTGCTTCCCCGGGCCGCCGTGGAACAGACCGTGCCCGGATTCGACAAGCCGCTCAGCCTTTGGAAC
GTAACGATTGACGGCCGGCAACGTGAAATGGCCATGGTGCGGCGCATCGGTCTCAAGGCGCAGATGGTCGATCCTGCAAA
TCCGGGGCAACCGGTCGGTGTCGACGTGAAGGGGATCACGCCGGTCCAGCATCTGACGGTTGCCACCGAGAACTACACCG
ATCCGCTGACGCGCTTCAACTTCCTGACCTTCCTGAAGAATTCGGTCTTCGTCACCGTGGTTGCCACGCTGCTGACGCTG
ATCGTCAACGCCATGGCTGCTTTTGCGCTGTCGAAATACAAATTTCGGGGCGACACGACTGTGTTCGTCATCATCATCTC
GACCTTGATGATCCCGCTCGCCGTCGTCATGGTTCCGGCCTATCTCGTCATCGTGGGGGTCGGGCTTGCCGATAATCTCT
GGGGCGTCATCCTGCCGACCGTCGCCTCTCCGACGGCCGTGTTCCTGCTGCGGCAATACATGCTGACCATACCCGACGAG
CTGATCGAGGCGGCGCGCGTCGATGCGGCGAGCGAATTCTGCATCTTCTGGCGGATCATCCTGCCGCTGACGGCGCCGGC
GCTTGCGGTGCTGGCGATCTTTTCCGTGCTCTGGCGCTGGAACGATTTCCTCTGGCCGCTCATCGTCCTCAACAGCCGCG
AGAATTTCACCCTGCAGGTCGGTCTCAACGCCTTCCAGGGAGAGTTCTCGGTGCAGTGGCACTATATCCTGGCGATGACC
TTCCTCAGCCTGTTGCCCGTCACCGTCGTCTTCCTGTTCCTGCAGAAATACATCACCACGGGCATTGCCGGTACGGGAAT
GAAGTGA

Upstream 100 bases:

>100_bases
CTCTTCGGGCTTGCCTCCGCCGCATCGGTTCTCATGGGTCTGGTGCTTCTGGTCCTCACCCTCATACAGCTGCGCCTCGG
CAAGCGAATGGAGTCCTGAG

Downstream 100 bases:

>100_bases
ACGAAGCCTGGCGCAGCCCCGATTGGGGTCGAGATGAGCAAACCTCCCAAGCATTGAAGACTGCCTTCCCATCTCGCGCC
AGCTGAAGCGCACCGCACCT

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSPISFLSRTRRAGRIDITDVLSWVWLIGGTLAVLIPVLWAGLSSLKPAAEITRFPPSLLPRAAVEQTVPGFDKPLSLWN
VTIDGRQREMAMVRRIGLKAQMVDPANPGQPVGVDVKGITPVQHLTVATENYTDPLTRFNFLTFLKNSVFVTVVATLLTL
IVNAMAAFALSKYKFRGDTTVFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQVGLNAFQGEFSVQWHYILAMT
FLSLLPVTVVFLFLQKYITTGIAGTGMK

Sequences:

>Translated_348_residues
MSPISFLSRTRRAGRIDITDVLSWVWLIGGTLAVLIPVLWAGLSSLKPAAEITRFPPSLLPRAAVEQTVPGFDKPLSLWN
VTIDGRQREMAMVRRIGLKAQMVDPANPGQPVGVDVKGITPVQHLTVATENYTDPLTRFNFLTFLKNSVFVTVVATLLTL
IVNAMAAFALSKYKFRGDTTVFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQVGLNAFQGEFSVQWHYILAMT
FLSLLPVTVVFLFLQKYITTGIAGTGMK
>Mature_347_residues
SPISFLSRTRRAGRIDITDVLSWVWLIGGTLAVLIPVLWAGLSSLKPAAEITRFPPSLLPRAAVEQTVPGFDKPLSLWNV
TIDGRQREMAMVRRIGLKAQMVDPANPGQPVGVDVKGITPVQHLTVATENYTDPLTRFNFLTFLKNSVFVTVVATLLTLI
VNAMAAFALSKYKFRGDTTVFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDEL
IEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQVGLNAFQGEFSVQWHYILAMTF
LSLLPVTVVFLFLQKYITTGIAGTGMK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=207, Percent_Identity=33.8164251207729, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1787571, Length=224, Percent_Identity=32.5892857142857, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790464, Length=218, Percent_Identity=27.5229357798165, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38461; Mature: 38330

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPISFLSRTRRAGRIDITDVLSWVWLIGGTLAVLIPVLWAGLSSLKPAAEITRFPPSLL
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHC
PRAAVEQTVPGFDKPLSLWNVTIDGRQREMAMVRRIGLKAQMVDPANPGQPVGVDVKGIT
CHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCC
PVQHLTVATENYTDPLTRFNFLTFLKNSVFVTVVATLLTLIVNAMAAFALSKYKFRGDTT
CHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
VFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHH
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
GLNAFQGEFSVQWHYILAMTFLSLLPVTVVFLFLQKYITTGIAGTGMK
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SPISFLSRTRRAGRIDITDVLSWVWLIGGTLAVLIPVLWAGLSSLKPAAEITRFPPSLL
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHC
PRAAVEQTVPGFDKPLSLWNVTIDGRQREMAMVRRIGLKAQMVDPANPGQPVGVDVKGIT
CHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCC
PVQHLTVATENYTDPLTRFNFLTFLKNSVFVTVVATLLTLIVNAMAAFALSKYKFRGDTT
CHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
VFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHH
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
GLNAFQGEFSVQWHYILAMTFLSLLPVTVVFLFLQKYITTGIAGTGMK
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]