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The map label for this gene is agpA [H]

Identifier: 86360964

GI number: 86360964

Start: 248486

End: 250423

Strand: Reverse

Name: agpA [H]

Synonym: RHE_PF00234

Alternate gene names: 86360964

Gene position: 250423-248486 (Counterclockwise)

Preceding gene: 86360976

Following gene: 86360963

Centisome position: 38.98

GC content: 60.47

Gene sequence:

>1938_bases
ATGCCCAATGAAATTCTGTCTCGCGGTGTCACCCGCCGCGCCGTTCTCGGCGGCATGGCTGGTGCTGCAGCACTGTCCAT
CGCCGGTCGTGCCTTCGCCGCCGACGGGGAAGCGCCTGCGCTGGCGCAACTGGTCAAAGACGGCAAACTGCCGCCGCTGG
CCGAGCGCCTGCCGAAGAAGCCGATGGTGGTAACGCCGTTCGAGAAGGTCGGCACATATGGCGGGACGTTGCGCCGCGGC
CTGCGCGGTTCATCCGACCATAACGGCATTCTGCGCATGGTCGGCAACCAGAGCCTCGTGCGCTGGAATCTGGAATTCAC
CGCCGTGCAGCCGAACCTCGCCGAGCGCTGGGAAGTCAGCGACGACGCGACGCAATTCACCTTCCACCTGATCGAAGGTG
TGCGCTGGTCGGACGGCCACCCCTTCACGGCCGACGACGTTGTTTTCGCGATCGAAGACTGCGTGAAGAACACCGAGCTT
TACAGCGCGACGCCGGCGCAGCTAGCCGTTGCCGGCAAGCCGGTCACTGTCGAAAAGATCGACGATTATACGGTGAAATT
CACCTTCGCCGCGCCGAACGCGCTTTATCTCGAAAACCTTGCCACGCCGCTCGGTCAGCATCCGACGCTCTTCCCGAAGC
ATTACTGCAGCCAGTTCCTGCCGAAGTACAATCCCAACATCGAGGCCGATGCCAAGAATGCAGGCGTCACCAGCTGGACG
GAGCTCTTCCGCAACCGCTGCGGCGACATCGAAATTCCGACGCGCTGGGGCAATGTCGTCAAGCCGACACTCGATCCTTG
GGTCGTCAAGGAACCCTATGTCGGCGGCGCCACGCGCGTCGTCATGACCCGGAACCCCTATTTCTGGCAGGTCGATACGG
CAGGCAACCAGCTTCCCTACATCGATGAGATCAATTTCGGCATTTCGCAGGACGTCGAGTCGCTGATGCTGAACGTCATC
TCAGGAAAGATCGACATCCAGGAACGTCACATCAGCGTGCTGGCCAATAAGCCGACTCTCTCCCAGAACATGCAGAAGGG
CGATTATCGTCTGCTGACGCTCGTGCCTTCCGCCTCACAACAATGCCAGATCTACTTCAATATCACCCACAAAGATCCTG
CCATGCGCAAGATGTTTGCAGACAAGTCCTTCCGGCAGGCGCTCTCGATAGGCATCAATCGCCAAGAACTCATCGACATC
GTCTATTTCGGGCAGAGTGAGCCTTATCAGGCCGGGCCGCGTCCGACCCATCCGTGGTATCACGAGAAGTACGCGCGTCA
ATTCACCGAATACGACGCCGACAAGGCAGGCGCGATGCTTGATCAGGCCGGCTACAAGAAGGGGCCTGACGGCTTTCGCG
TGCGGCCCGACGGTCAGAAGGTGTTCTTCTCGGTCGACGTCATTCCGACGCTTTATCCCGATCTCGTCGATGCCCTGGAG
CTGGTCAAGACGCATTGGTCGCAGATTGGCATCGACATGAAGGTCAATACGATCGAGCGGGCGCTCTATTATACCCGCGG
CGATGACAATGCCCATGATGCGCAGGTGTGGCCGGGGCCGGGTGGTCTCGATCCGATGCTCGACCCTCGCGATTTCTTCG
CCTTCCATCCGCAGGGGTCGCGTTACGCCATTCCGTGGACGCTCTGGTATACGTCTAACGGCGCGCGTGGCGAGGAGCCG
CCGGAAAGCCAGAAGAAGCGCATGAAGCTGTTCGACGAAGCGCGTTCGACGGCCGATCTCGACAAACGCGGCGCGACCAT
GAAGCAGATCTTCGACATCGCCGCGGAGGAATTCGAGACCGTGGGCCTTTGCCTCGCGGTCGGCGGCTTCGGCATCATCC
GCAATAATCTGCGCAATGTTCCCGAGAAGCAGCCGGATAGCTGGTCCTGGCCCAATCCGGGGCCTTCGATGCCGCAGCAG
TTCACCTTCACGAGCTGA

Upstream 100 bases:

>100_bases
ATCATTTGAGAACGTGTCTATGGTTTCGTTCCAGCGCCGAGGAGGGCGCAAAACGGCAAGTCGCGAGCCCGCCTGTGCCG
GCATAAAAGGGGAGGAATCG

Downstream 100 bases:

>100_bases
TTTTGATCGAGCGCCGTACCGACGGTACGGCGCTTTCTTCGGTTCGCCTTCCGATGCCTCGCCGGCGATGAGATCCGGCA
AGGCCCGGAGGGCGGGACTC

Product: oligopeptide ABC transporter, substrate-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 644

Protein sequence:

>645_residues
MPNEILSRGVTRRAVLGGMAGAAALSIAGRAFAADGEAPALAQLVKDGKLPPLAERLPKKPMVVTPFEKVGTYGGTLRRG
LRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAERWEVSDDATQFTFHLIEGVRWSDGHPFTADDVVFAIEDCVKNTEL
YSATPAQLAVAGKPVTVEKIDDYTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKNAGVTSWT
ELFRNRCGDIEIPTRWGNVVKPTLDPWVVKEPYVGGATRVVMTRNPYFWQVDTAGNQLPYIDEINFGISQDVESLMLNVI
SGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDI
VYFGQSEPYQAGPRPTHPWYHEKYARQFTEYDADKAGAMLDQAGYKKGPDGFRVRPDGQKVFFSVDVIPTLYPDLVDALE
LVKTHWSQIGIDMKVNTIERALYYTRGDDNAHDAQVWPGPGGLDPMLDPRDFFAFHPQGSRYAIPWTLWYTSNGARGEEP
PESQKKRMKLFDEARSTADLDKRGATMKQIFDIAAEEFETVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPSMPQQ
FTFTS

Sequences:

>Translated_645_residues
MPNEILSRGVTRRAVLGGMAGAAALSIAGRAFAADGEAPALAQLVKDGKLPPLAERLPKKPMVVTPFEKVGTYGGTLRRG
LRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAERWEVSDDATQFTFHLIEGVRWSDGHPFTADDVVFAIEDCVKNTEL
YSATPAQLAVAGKPVTVEKIDDYTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKNAGVTSWT
ELFRNRCGDIEIPTRWGNVVKPTLDPWVVKEPYVGGATRVVMTRNPYFWQVDTAGNQLPYIDEINFGISQDVESLMLNVI
SGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDI
VYFGQSEPYQAGPRPTHPWYHEKYARQFTEYDADKAGAMLDQAGYKKGPDGFRVRPDGQKVFFSVDVIPTLYPDLVDALE
LVKTHWSQIGIDMKVNTIERALYYTRGDDNAHDAQVWPGPGGLDPMLDPRDFFAFHPQGSRYAIPWTLWYTSNGARGEEP
PESQKKRMKLFDEARSTADLDKRGATMKQIFDIAAEEFETVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPSMPQQ
FTFTS
>Mature_644_residues
PNEILSRGVTRRAVLGGMAGAAALSIAGRAFAADGEAPALAQLVKDGKLPPLAERLPKKPMVVTPFEKVGTYGGTLRRGL
RGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAERWEVSDDATQFTFHLIEGVRWSDGHPFTADDVVFAIEDCVKNTELY
SATPAQLAVAGKPVTVEKIDDYTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKNAGVTSWTE
LFRNRCGDIEIPTRWGNVVKPTLDPWVVKEPYVGGATRVVMTRNPYFWQVDTAGNQLPYIDEINFGISQDVESLMLNVIS
GKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQQCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDIV
YFGQSEPYQAGPRPTHPWYHEKYARQFTEYDADKAGAMLDQAGYKKGPDGFRVRPDGQKVFFSVDVIPTLYPDLVDALEL
VKTHWSQIGIDMKVNTIERALYYTRGDDNAHDAQVWPGPGGLDPMLDPRDFFAFHPQGSRYAIPWTLWYTSNGARGEEPP
ESQKKRMKLFDEARSTADLDKRGATMKQIFDIAAEEFETVGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPSMPQQF
TFTS

Specific function: Probably involved in an alpha-galactosides intake transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=504, Percent_Identity=24.4047619047619, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1787551, Length=355, Percent_Identity=24.5070422535211, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 72158; Mature: 72026

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNEILSRGVTRRAVLGGMAGAAALSIAGRAFAADGEAPALAQLVKDGKLPPLAERLPKK
CCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCHHHHHCCCC
PMVVTPFEKVGTYGGTLRRGLRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAERWEVS
CEEECCHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCHHHHCCCC
DDATQFTFHLIEGVRWSDGHPFTADDVVFAIEDCVKNTELYSATPAQLAVAGKPVTVEKI
CCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEECCCCEEEEEC
DDYTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKNAGVTSWT
CCEEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
ELFRNRCGDIEIPTRWGNVVKPTLDPWVVKEPYVGGATRVVMTRNPYFWQVDTAGNQLPY
HHHHHCCCCEECCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCCC
IDEINFGISQDVESLMLNVISGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQ
HHCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHCCCCCCEEEEEEECCCCC
QCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDIVYFGQSEPYQAGPRPTHPWY
CEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCCCCHH
HEKYARQFTEYDADKAGAMLDQAGYKKGPDGFRVRPDGQKVFFSVDVIPTLYPDLVDALE
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEECCCCCEEEEEEECHHHHHHHHHHHHH
LVKTHWSQIGIDMKVNTIERALYYTRGDDNAHDAQVWPGPGGLDPMLDPRDFFAFHPQGS
HHHHHHHHHCCEEEEHHHHHHHEEECCCCCCCCCEECCCCCCCCCCCCCCHHEEECCCCC
RYAIPWTLWYTSNGARGEEPPESQKKRMKLFDEARSTADLDKRGATMKQIFDIAAEEFET
EEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPSMPQQFTFTS
HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PNEILSRGVTRRAVLGGMAGAAALSIAGRAFAADGEAPALAQLVKDGKLPPLAERLPKK
CHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCHHHHHCCCC
PMVVTPFEKVGTYGGTLRRGLRGSSDHNGILRMVGNQSLVRWNLEFTAVQPNLAERWEVS
CEEECCHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEEEECCCHHHHCCCC
DDATQFTFHLIEGVRWSDGHPFTADDVVFAIEDCVKNTELYSATPAQLAVAGKPVTVEKI
CCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEECCCCEEEEEC
DDYTVKFTFAAPNALYLENLATPLGQHPTLFPKHYCSQFLPKYNPNIEADAKNAGVTSWT
CCEEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
ELFRNRCGDIEIPTRWGNVVKPTLDPWVVKEPYVGGATRVVMTRNPYFWQVDTAGNQLPY
HHHHHCCCCEECCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCCC
IDEINFGISQDVESLMLNVISGKIDIQERHISVLANKPTLSQNMQKGDYRLLTLVPSASQ
HHCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHCCCCCCEEEEEEECCCCC
QCQIYFNITHKDPAMRKMFADKSFRQALSIGINRQELIDIVYFGQSEPYQAGPRPTHPWY
CEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCCCCHH
HEKYARQFTEYDADKAGAMLDQAGYKKGPDGFRVRPDGQKVFFSVDVIPTLYPDLVDALE
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEECCCCCEEEEEEECHHHHHHHHHHHHH
LVKTHWSQIGIDMKVNTIERALYYTRGDDNAHDAQVWPGPGGLDPMLDPRDFFAFHPQGS
HHHHHHHHHCCEEEEHHHHHHHEEECCCCCCCCCEECCCCCCCCCCCCCCHHEEECCCCC
RYAIPWTLWYTSNGARGEEPPESQKKRMKLFDEARSTADLDKRGATMKQIFDIAAEEFET
EEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VGLCLAVGGFGIIRNNLRNVPEKQPDSWSWPNPGPSMPQQFTFTS
HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9791127; 11481431 [H]