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The map label for this gene is rbsC [H]

Identifier: 86360946

GI number: 86360946

Start: 227527

End: 228552

Strand: Reverse

Name: rbsC [H]

Synonym: RHE_PF00215

Alternate gene names: 86360946

Gene position: 228552-227527 (Counterclockwise)

Preceding gene: 86360947

Following gene: 86360945

Centisome position: 35.57

GC content: 58.28

Gene sequence:

>1026_bases
ATGATCAAGAAAGATCTTGGACTGCTGCTTTTGATCGTCGTTGTCGGCGTCGTGGTCGCCATCATCAACCCGCGCTTCTT
GCTGCCGATCAACCTTGCCAACACCGCCAACCTGATCGGTCTGTTCGGCATCCTGTCGATGGGCCAGGCCTTTGTCATCA
TTACGGGCGGTATCGAGCTTTCGGTGGGCTCGCTCGTAGCGCTTCTTGGCGTTTTATTCGTCGATTTCATTGCGGTACAA
TATATGCCCTGGACGCTGGCACTGCCGCTCATTCTCCTGCTCGGCGCAGTCATGGGCGCCGTCCACGGGTGGCTCATCAC
CCGGCTCAACTTGCAGCCCTTTGTCGTCACTCTTTGCGGCCTCCTGATCTATCGCGGGGCAGCGCGCTTCTATACGGCCG
ACGGGACGGCGGGATTTGCTTTCGGCCAGAATTTCCCGGAGCTCGAGTTTCTGACCGCCGGACGGTTCTATGGCATTCCG
AGCACCTTCATTGCTATGGTCGTCATTGCCGTGGCCATGTGGCTGGTGCTTCATCGCTCTGTCTTCGGACGTTATCTTTA
CGCGGTTGGAAAAAACGAAGAGGCGGCTCGCTATTCAGGTATCCGGACTGACCGTTTGGTTATGACGGCCTATGTCATCT
GCGGACTGCTTACGGCGCTTTCGGCGATCTATTTCGCCATGTACACGCGCTCGATCTCGCCGGCGAGCCATGGCCAGTTC
TACGAGCTCTACGCGATCGCCGCCGCCGTGCTCGGCGGCTTTTCACTTCGCGGCGGTGAGGGATCGATCGTCGGGGTCGT
GCTGGGCACAGTCCTGCTGCAAGAGTTGCAAAACCTTGTGAACCTGCTCGGCATTCCCTCGTCGCTGAACTTCGCCGTCA
TGGGTGGCGTGATCCTCATGGGAGTCCTGATCGACCAACAATGGCATTCGATCCGCGCAAAGCGACGCCTCGTCTCCGCC
GCACGGCAGACTGAATCCCGTCTTCCAAACGAAGGAAGCTTGCCGGTGGTTGCTAATCGGGACTAA

Upstream 100 bases:

>100_bases
GAAGAGGACGAATTCAGCCAGGAAAGCGTCCTTTTGCTTGCTGTCGGCAAAAGCGTAAAATAGCGGCTGCGGCCATTAGG
GTATCGGAGATGGGCCTCAA

Downstream 100 bases:

>100_bases
GAAACAGGCAGGCGGCTTGTCGGCTGCTCATAGGGCATAGTGCGATGACCATCGGCATGTCACCGAAAGACGGCAGTGGC
TGACACTATTTGGACGGAAG

Product: sugar ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MIKKDLGLLLLIVVVGVVVAIINPRFLLPINLANTANLIGLFGILSMGQAFVIITGGIELSVGSLVALLGVLFVDFIAVQ
YMPWTLALPLILLLGAVMGAVHGWLITRLNLQPFVVTLCGLLIYRGAARFYTADGTAGFAFGQNFPELEFLTAGRFYGIP
STFIAMVVIAVAMWLVLHRSVFGRYLYAVGKNEEAARYSGIRTDRLVMTAYVICGLLTALSAIYFAMYTRSISPASHGQF
YELYAIAAAVLGGFSLRGGEGSIVGVVLGTVLLQELQNLVNLLGIPSSLNFAVMGGVILMGVLIDQQWHSIRAKRRLVSA
ARQTESRLPNEGSLPVVANRD

Sequences:

>Translated_341_residues
MIKKDLGLLLLIVVVGVVVAIINPRFLLPINLANTANLIGLFGILSMGQAFVIITGGIELSVGSLVALLGVLFVDFIAVQ
YMPWTLALPLILLLGAVMGAVHGWLITRLNLQPFVVTLCGLLIYRGAARFYTADGTAGFAFGQNFPELEFLTAGRFYGIP
STFIAMVVIAVAMWLVLHRSVFGRYLYAVGKNEEAARYSGIRTDRLVMTAYVICGLLTALSAIYFAMYTRSISPASHGQF
YELYAIAAAVLGGFSLRGGEGSIVGVVLGTVLLQELQNLVNLLGIPSSLNFAVMGGVILMGVLIDQQWHSIRAKRRLVSA
ARQTESRLPNEGSLPVVANRD
>Mature_341_residues
MIKKDLGLLLLIVVVGVVVAIINPRFLLPINLANTANLIGLFGILSMGQAFVIITGGIELSVGSLVALLGVLFVDFIAVQ
YMPWTLALPLILLLGAVMGAVHGWLITRLNLQPFVVTLCGLLIYRGAARFYTADGTAGFAFGQNFPELEFLTAGRFYGIP
STFIAMVVIAVAMWLVLHRSVFGRYLYAVGKNEEAARYSGIRTDRLVMTAYVICGLLTALSAIYFAMYTRSISPASHGQF
YELYAIAAAVLGGFSLRGGEGSIVGVVLGTVLLQELQNLVNLLGIPSSLNFAVMGGVILMGVLIDQQWHSIRAKRRLVSA
ARQTESRLPNEGSLPVVANRD

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=37.1335504885993, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI145693152, Length=315, Percent_Identity=33.015873015873, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87082395, Length=299, Percent_Identity=32.1070234113712, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790524, Length=263, Percent_Identity=31.5589353612167, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=33.0827067669173, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787794, Length=340, Percent_Identity=30.8823529411765, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788896, Length=316, Percent_Identity=32.5949367088608, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=38.4057971014493, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=264, Percent_Identity=35.2272727272727, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788471, Length=264, Percent_Identity=28.7878787878788, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36709; Mature: 36709

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKDLGLLLLIVVVGVVVAIINPRFLLPINLANTANLIGLFGILSMGQAFVIITGGIEL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCEE
SVGSLVALLGVLFVDFIAVQYMPWTLALPLILLLGAVMGAVHGWLITRLNLQPFVVTLCG
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LLIYRGAARFYTADGTAGFAFGQNFPELEFLTAGRFYGIPSTFIAMVVIAVAMWLVLHRS
HHHHHCCHHEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VFGRYLYAVGKNEEAARYSGIRTDRLVMTAYVICGLLTALSAIYFAMYTRSISPASHGQF
HHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
YELYAIAAAVLGGFSLRGGEGSIVGVVLGTVLLQELQNLVNLLGIPSSLNFAVMGGVILM
HHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GVLIDQQWHSIRAKRRLVSAARQTESRLPNEGSLPVVANRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
>Mature Secondary Structure
MIKKDLGLLLLIVVVGVVVAIINPRFLLPINLANTANLIGLFGILSMGQAFVIITGGIEL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCEE
SVGSLVALLGVLFVDFIAVQYMPWTLALPLILLLGAVMGAVHGWLITRLNLQPFVVTLCG
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LLIYRGAARFYTADGTAGFAFGQNFPELEFLTAGRFYGIPSTFIAMVVIAVAMWLVLHRS
HHHHHCCHHEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VFGRYLYAVGKNEEAARYSGIRTDRLVMTAYVICGLLTALSAIYFAMYTRSISPASHGQF
HHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
YELYAIAAAVLGGFSLRGGEGSIVGVVLGTVLLQELQNLVNLLGIPSSLNFAVMGGVILM
HHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GVLIDQQWHSIRAKRRLVSAARQTESRLPNEGSLPVVANRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]