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The map label for this gene is repCf2

Identifier: 86360943

GI number: 86360943

Start: 223367

End: 224671

Strand: Reverse

Name: repCf2

Synonym: RHE_PF00212

Alternate gene names: NA

Gene position: 224671-223367 (Counterclockwise)

Preceding gene: 86360944

Following gene: 86360941

Centisome position: 34.97

GC content: 62.68

Gene sequence:

>1305_bases
ATGGAGAGTGGTTATGTGACGACGCCCTTCGGGCGGCGGCCGATGTCGCTTGGCATGCTGGCAAGCCAGCAGCAGGCCGG
GACGATCGAGCCGGGGATGATGCGCAGCAAGTGGAAGCTGTTTCGGGCAATTTGCGAGGCGCGACCGGCGCTCGGCGTGA
CCGATCGGGCGCTGACGGTGCTTGATGCGCTGCTGACCTTTTATCCCGACGATGAAATTTCCGAGGAGAAGGGCCTGATC
GTCTTTCCCTCGAATGCACAGCTATCGCTGCGCGCCCGCGGCATGACGCCGGCGACGCTGCGGCGGCACTTGGCCGTCCT
GGTCGAGGCTGGCCTGATCTTGCGCAAGGACAGTCCGAACGGGAAACGCTATGCCCGCCGCGACAGGGCAGGGGCCATCG
GCGAAGCTTACGGCTTCAGCATCGCGCCGCTTCTGGCCCGTGCGGTCGAGATTGAAAATCTGGCAGCCCAGGCAGTTGCC
GACCGGGAACTGCTCCGGGCGACCAGAGAACGCCTGACGATCTGCCGGCGCGATATTTCCAAGCTGATTTCGGCGGCCAT
CGACGAAGCGGTTCCCGGTGACTGGGAGCAGATGACGGTGATGTTTCGTGCTCTTGTCGCACGGATCCCGCGGGTGGCGA
GCACCGAAGAACTGGCATCGCTGCTCGAAGAAATGGGGCTGCTGCGCGACGAGGCCGTCAACCTGCTGGAAAGACAGATA
AAAAGAGAAAAATTGGACGCCAATGAATCTCAAATTGAGCGCCACAAACAGAATTCAAACCCCGACTCCACTATTGAACT
TGAACCAAGCTTCGACACGAAGCAGGGCGAAAAGGCAGCGGCAAACAATGAAGGGGTGGCCGAGCCGTCGGATTCGCAAA
GGCTGAAATTGCCGAGGCCTTCTGCCGGATCTGGTGGCAAGGCGCCGAATGCCGCCAATCCTATCGCCGGCCACAGCCTG
AAATCCTTCCCGCTCGGCCTTGTCCTGCAGGCCTGCCCCGCCATTCTCGATTATGGGCCGGGTGGCGCGATCGCCAATTG
GCGCGACCTGATGTCGGCCGCCGTCGTCGTGCGCTCGATGCTCGGCGTCAGCCCCTCGGCCTATGAGGAAGCCTGCGCCG
GCATGGGGCCGGAAAACGCCGCGACCGTGATCGCCTGCATCTTGGAACGGGGAGGACACATCAACTCGCCCGGCGGCTAT
CTCCGCGATCTCACCCGCAGGACCGAAAGGGGCGAATTCGCGATTGGCCCGATGCTGATGGCGCTCGTCAGGGCGAATGG
TGGGGCGAAGCGCCATGCCGGATAA

Upstream 100 bases:

>100_bases
CTTAAGCACATCGAGAATCGCATTTCCACGAATCACAGTCAAGCGTCTTAGGCACCAAATTGGTGGATGGTTTTCTTTTG
CCTGAACGAAGGTGAAGGCA

Downstream 100 bases:

>100_bases
AGGCCCCAGCTACAGCGCAGTTGCGCCGTTGCCTCATCTGGTAAACTCACCTGCTTCCAGTCCGATTGGCGGCTGGACGA
AAGGTCTCGGCGACAGGAGC

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MESGYVTTPFGRRPMSLGMLASQQQAGTIEPGMMRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAYGFSIAPLLARAVEIENLAAQAVA
DRELLRATRERLTICRRDISKLISAAIDEAVPGDWEQMTVMFRALVARIPRVASTEELASLLEEMGLLRDEAVNLLERQI
KREKLDANESQIERHKQNSNPDSTIELEPSFDTKQGEKAAANNEGVAEPSDSQRLKLPRPSAGSGGKAPNAANPIAGHSL
KSFPLGLVLQACPAILDYGPGGAIANWRDLMSAAVVVRSMLGVSPSAYEEACAGMGPENAATVIACILERGGHINSPGGY
LRDLTRRTERGEFAIGPMLMALVRANGGAKRHAG

Sequences:

>Translated_434_residues
MESGYVTTPFGRRPMSLGMLASQQQAGTIEPGMMRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAYGFSIAPLLARAVEIENLAAQAVA
DRELLRATRERLTICRRDISKLISAAIDEAVPGDWEQMTVMFRALVARIPRVASTEELASLLEEMGLLRDEAVNLLERQI
KREKLDANESQIERHKQNSNPDSTIELEPSFDTKQGEKAAANNEGVAEPSDSQRLKLPRPSAGSGGKAPNAANPIAGHSL
KSFPLGLVLQACPAILDYGPGGAIANWRDLMSAAVVVRSMLGVSPSAYEEACAGMGPENAATVIACILERGGHINSPGGY
LRDLTRRTERGEFAIGPMLMALVRANGGAKRHAG
>Mature_434_residues
MESGYVTTPFGRRPMSLGMLASQQQAGTIEPGMMRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAYGFSIAPLLARAVEIENLAAQAVA
DRELLRATRERLTICRRDISKLISAAIDEAVPGDWEQMTVMFRALVARIPRVASTEELASLLEEMGLLRDEAVNLLERQI
KREKLDANESQIERHKQNSNPDSTIELEPSFDTKQGEKAAANNEGVAEPSDSQRLKLPRPSAGSGGKAPNAANPIAGHSL
KSFPLGLVLQACPAILDYGPGGAIANWRDLMSAAVVVRSMLGVSPSAYEEACAGMGPENAATVIACILERGGHINSPGGY
LRDLTRRTERGEFAIGPMLMALVRANGGAKRHAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes possible replication protein C (repC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 46855; Mature: 46855

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00047 HISTONE_H4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGYVTTPFGRRPMSLGMLASQQQAGTIEPGMMRSKWKLFRAICEARPALGVTDRALTV
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDALLTFYPDDEISEEKGLIVFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCEEEECCCCC
GKRYARRDRAGAIGEAYGFSIAPLLARAVEIENLAAQAVADRELLRATRERLTICRRDIS
CHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLISAAIDEAVPGDWEQMTVMFRALVARIPRVASTEELASLLEEMGLLRDEAVNLLERQI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KREKLDANESQIERHKQNSNPDSTIELEPSFDTKQGEKAAANNEGVAEPSDSQRLKLPRP
HHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCC
SAGSGGKAPNAANPIAGHSLKSFPLGLVLQACPAILDYGPGGAIANWRDLMSAAVVVRSM
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LGVSPSAYEEACAGMGPENAATVIACILERGGHINSPGGYLRDLTRRTERGEFAIGPMLM
HCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
ALVRANGGAKRHAG
HHHHCCCCCCCCCC
>Mature Secondary Structure
MESGYVTTPFGRRPMSLGMLASQQQAGTIEPGMMRSKWKLFRAICEARPALGVTDRALTV
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDALLTFYPDDEISEEKGLIVFPSNAQLSLRARGMTPATLRRHLAVLVEAGLILRKDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCEEEECCCCC
GKRYARRDRAGAIGEAYGFSIAPLLARAVEIENLAAQAVADRELLRATRERLTICRRDIS
CHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLISAAIDEAVPGDWEQMTVMFRALVARIPRVASTEELASLLEEMGLLRDEAVNLLERQI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KREKLDANESQIERHKQNSNPDSTIELEPSFDTKQGEKAAANNEGVAEPSDSQRLKLPRP
HHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCC
SAGSGGKAPNAANPIAGHSLKSFPLGLVLQACPAILDYGPGGAIANWRDLMSAAVVVRSM
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LGVSPSAYEEACAGMGPENAATVIACILERGGHINSPGGYLRDLTRRTERGEFAIGPMLM
HCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
ALVRANGGAKRHAG
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]