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The map label for this gene is 86360929

Identifier: 86360929

GI number: 86360929

Start: 207840

End: 209642

Strand: Reverse

Name: 86360929

Synonym: RHE_PF00198

Alternate gene names: NA

Gene position: 209642-207840 (Counterclockwise)

Preceding gene: 86360936

Following gene: 86360928

Centisome position: 32.63

GC content: 61.18

Gene sequence:

>1803_bases
TTGGATCAGAGGTCCCGTGTACTGTCGCTACGAGACGTCGCCAGTCAGATCAACAGCGGCGGCGATCTTCAGGCCGTTCT
GCAGCAACTGATTGCCGCCGCCTGCCGTCATGCGGACTGGGCGTTGGGATCGATCATGAGCATCGATGCCGCCCATGGTT
ACGCCTACGTCATCGTACGCTACGATCCGACACTGATAGAACGGCAGCTGCCGGACAAATGGGAATTGGCGACAAGCCCG
TCCTTAATCGCTCTGCAGCGAAACGAGCCCGTCTATATCCCCGATGCACGCCAGTCTGCCGAGTTTCCCGGCTATCGGGC
GGAGGCCTTCGATCGTGACTACCGCACCGTCTTGGTCTTGCCCATGAATTGCAAGGATGCGGAAGGCCGGCCGATGGTCC
TCAGCGTCATCGCCCGACAGATCACCGAAGTATCGGAGGACGATCTTGCCTTCCTCGGCACCATCATCCATCTGGGTGCA
ATCGCCGTGGAGCGCGAACACCGGCTTGAAGCCGAGAAGCGGTCGGCGCAGCGGCTCGAGCGAGCCCTGAAAGCGCATAC
GTCGCTGCTCGAGCATGTGCTCAGCGACGGGTCGGTCGCACCGCTTTCGGCGATGGTTGGAATGATGCTGCCGAACCCGA
CGGTGGTGATCGACTTTACCGCCAATCAGGTGATCGCCGGGCGCCCGCCGAACGCACTATACGACGAGACCTCCTGGCCG
GAAGCCGCTTCCACGACTCTCGCCCGGCCGTTGATGAAGGCGGCGCGTGATGCGATCGAACACGGCACGACGAATGCGGC
CAACCTTTTTCTCGACGACGGCACACAACGTTTCCGGATCTCCGCCCGCATCGAGGAGCTGATGGTCGACAATCAGCTGG
TCGGTGCGTTGATCATCTTCCCAACCGCCCGCGAATTCAGCGATCTCGACTTGCTGATGCTCGACAGCGCCAAATTCGCG
CTGAGCGTCCAGATGATGCGTAGCTTCATCCGGTTCCGGTTTGAAACCCGGACGCAGACCGAACTGTTCTTCGAAATCGT
CGAGGCCCGTTGGCGCGACGCCGGCGATATCGCGCAACGGGCTCAGCGGCTCGGATTGAGCTTCGCCATCCCGCAGCAGA
TGATTGTCGTCGATTTCCCCGATAAGACAAAGGCTTTCGGTGGGGCTTCCGTAGATGTCGAACACACGCTGACGCGCATC
ATGCAACAGGCCTCGGTGCAGGCGAACCTGATCGCGATCGACGGTGGTGTTGTTTGCCTCATGCCCTATGACACGAGCAA
GCGTCAGGAGCGCACGGCCAAGCTCACCCGCCGCATCGCCGAGGAACTCGGCCGCTATTTCGGCGAGGCGCCCGTTGTCG
TCTCAGGCAACCGCTGTGATGCGCTACCCGACTACTCGGCGGCTTGGGAGCGGTGCGGTCGCATGATCCGCATCGGCCGT
TCCTTTGGATTGACCGGTGCTATTTCAGCTCAGGACTTCGGGCCGCTTCCGATGTTGGTTGCGGCCTCGGAAGCCGGCGA
CGTGCGTAGTTTTGTCCAGGAAAGTGTCGGGGCTATCGCCGAGCACGATCGCGAAAACGGGACGCCCTATATGGAAACGC
TCTCCACCTATCTGCAGGAGGGGTGCCGCAGCCAGGCCTGCGCCGATACGATGGGCCTGCATGTTACGACGCTGCGTTAC
CGGCTCTCGCGCATTCAGGAGCTTTTCGGCGTCGATGTCGAGACTCCGGAAAAGCGCTTTGCCGTCGAATTGGCAATCCG
TCTGCACGGCGTCATTGACAATCGCTCGACCGCCCAGAGATAG

Upstream 100 bases:

>100_bases
TTTTCGCCGGAAGATAAATCAGCGGCTTCCTATGGATCCAAGTAGATTTGTCCGCTGAGGGCGCGCATACTCGCTGACGG
ATGTCAACGAGGCGAAACGA

Downstream 100 bases:

>100_bases
TTCTCCAGCCCTCATATACGCTCGTTCGAGGCTCTGCCCCCTCGCGCCGTTTTGTCTCCTCTGGATCGAGGCAGAAGTTT
TCCACCCCATCCTACGATGC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator CdaR; PucR Family Transcriptional Regulator; CdaR Family Transcriptional Regulator; GAF Domain Protein; Phytochrome Sensor Protein; Transcriptional Regulator CdaR Family

Number of amino acids: Translated: 600; Mature: 600

Protein sequence:

>600_residues
MDQRSRVLSLRDVASQINSGGDLQAVLQQLIAAACRHADWALGSIMSIDAAHGYAYVIVRYDPTLIERQLPDKWELATSP
SLIALQRNEPVYIPDARQSAEFPGYRAEAFDRDYRTVLVLPMNCKDAEGRPMVLSVIARQITEVSEDDLAFLGTIIHLGA
IAVEREHRLEAEKRSAQRLERALKAHTSLLEHVLSDGSVAPLSAMVGMMLPNPTVVIDFTANQVIAGRPPNALYDETSWP
EAASTTLARPLMKAARDAIEHGTTNAANLFLDDGTQRFRISARIEELMVDNQLVGALIIFPTAREFSDLDLLMLDSAKFA
LSVQMMRSFIRFRFETRTQTELFFEIVEARWRDAGDIAQRAQRLGLSFAIPQQMIVVDFPDKTKAFGGASVDVEHTLTRI
MQQASVQANLIAIDGGVVCLMPYDTSKRQERTAKLTRRIAEELGRYFGEAPVVVSGNRCDALPDYSAAWERCGRMIRIGR
SFGLTGAISAQDFGPLPMLVAASEAGDVRSFVQESVGAIAEHDRENGTPYMETLSTYLQEGCRSQACADTMGLHVTTLRY
RLSRIQELFGVDVETPEKRFAVELAIRLHGVIDNRSTAQR

Sequences:

>Translated_600_residues
MDQRSRVLSLRDVASQINSGGDLQAVLQQLIAAACRHADWALGSIMSIDAAHGYAYVIVRYDPTLIERQLPDKWELATSP
SLIALQRNEPVYIPDARQSAEFPGYRAEAFDRDYRTVLVLPMNCKDAEGRPMVLSVIARQITEVSEDDLAFLGTIIHLGA
IAVEREHRLEAEKRSAQRLERALKAHTSLLEHVLSDGSVAPLSAMVGMMLPNPTVVIDFTANQVIAGRPPNALYDETSWP
EAASTTLARPLMKAARDAIEHGTTNAANLFLDDGTQRFRISARIEELMVDNQLVGALIIFPTAREFSDLDLLMLDSAKFA
LSVQMMRSFIRFRFETRTQTELFFEIVEARWRDAGDIAQRAQRLGLSFAIPQQMIVVDFPDKTKAFGGASVDVEHTLTRI
MQQASVQANLIAIDGGVVCLMPYDTSKRQERTAKLTRRIAEELGRYFGEAPVVVSGNRCDALPDYSAAWERCGRMIRIGR
SFGLTGAISAQDFGPLPMLVAASEAGDVRSFVQESVGAIAEHDRENGTPYMETLSTYLQEGCRSQACADTMGLHVTTLRY
RLSRIQELFGVDVETPEKRFAVELAIRLHGVIDNRSTAQR
>Mature_600_residues
MDQRSRVLSLRDVASQINSGGDLQAVLQQLIAAACRHADWALGSIMSIDAAHGYAYVIVRYDPTLIERQLPDKWELATSP
SLIALQRNEPVYIPDARQSAEFPGYRAEAFDRDYRTVLVLPMNCKDAEGRPMVLSVIARQITEVSEDDLAFLGTIIHLGA
IAVEREHRLEAEKRSAQRLERALKAHTSLLEHVLSDGSVAPLSAMVGMMLPNPTVVIDFTANQVIAGRPPNALYDETSWP
EAASTTLARPLMKAARDAIEHGTTNAANLFLDDGTQRFRISARIEELMVDNQLVGALIIFPTAREFSDLDLLMLDSAKFA
LSVQMMRSFIRFRFETRTQTELFFEIVEARWRDAGDIAQRAQRLGLSFAIPQQMIVVDFPDKTKAFGGASVDVEHTLTRI
MQQASVQANLIAIDGGVVCLMPYDTSKRQERTAKLTRRIAEELGRYFGEAPVVVSGNRCDALPDYSAAWERCGRMIRIGR
SFGLTGAISAQDFGPLPMLVAASEAGDVRSFVQESVGAIAEHDRENGTPYMETLSTYLQEGCRSQACADTMGLHVTTLRY
RLSRIQELFGVDVETPEKRFAVELAIRLHGVIDNRSTAQR

Specific function: Unknown

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66579; Mature: 66579

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQRSRVLSLRDVASQINSGGDLQAVLQQLIAAACRHADWALGSIMSIDAAHGYAYVIVR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEEECCCCEEEEEEE
YDPTLIERQLPDKWELATSPSLIALQRNEPVYIPDARQSAEFPGYRAEAFDRDYRTVLVL
ECCHHHHHCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCHHHCCCCCEEEEEE
PMNCKDAEGRPMVLSVIARQITEVSEDDLAFLGTIIHLGAIAVEREHRLEAEKRSAQRLE
ECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RALKAHTSLLEHVLSDGSVAPLSAMVGMMLPNPTVVIDFTANQVIAGRPPNALYDETSWP
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCC
EAASTTLARPLMKAARDAIEHGTTNAANLFLDDGTQRFRISARIEELMVDNQLVGALIIF
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHHHHHHHHCCHHEEEEEEE
PTAREFSDLDLLMLDSAKFALSVQMMRSFIRFRFETRTQTELFFEIVEARWRDAGDIAQR
ECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
AQRLGLSFAIPQQMIVVDFPDKTKAFGGASVDVEHTLTRIMQQASVQANLIAIDGGVVCL
HHHCCCEEECCCEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEE
MPYDTSKRQERTAKLTRRIAEELGRYFGEAPVVVSGNRCDALPDYSAAWERCGRMIRIGR
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
SFGLTGAISAQDFGPLPMLVAASEAGDVRSFVQESVGAIAEHDRENGTPYMETLSTYLQE
HCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GCRSQACADTMGLHVTTLRYRLSRIQELFGVDVETPEKRFAVELAIRLHGVIDNRSTAQR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDQRSRVLSLRDVASQINSGGDLQAVLQQLIAAACRHADWALGSIMSIDAAHGYAYVIVR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHEEECCCCEEEEEEE
YDPTLIERQLPDKWELATSPSLIALQRNEPVYIPDARQSAEFPGYRAEAFDRDYRTVLVL
ECCHHHHHCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCHHHCCCCCEEEEEE
PMNCKDAEGRPMVLSVIARQITEVSEDDLAFLGTIIHLGAIAVEREHRLEAEKRSAQRLE
ECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RALKAHTSLLEHVLSDGSVAPLSAMVGMMLPNPTVVIDFTANQVIAGRPPNALYDETSWP
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCC
EAASTTLARPLMKAARDAIEHGTTNAANLFLDDGTQRFRISARIEELMVDNQLVGALIIF
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHHHHHHHHCCHHEEEEEEE
PTAREFSDLDLLMLDSAKFALSVQMMRSFIRFRFETRTQTELFFEIVEARWRDAGDIAQR
ECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
AQRLGLSFAIPQQMIVVDFPDKTKAFGGASVDVEHTLTRIMQQASVQANLIAIDGGVVCL
HHHCCCEEECCCEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEE
MPYDTSKRQERTAKLTRRIAEELGRYFGEAPVVVSGNRCDALPDYSAAWERCGRMIRIGR
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
SFGLTGAISAQDFGPLPMLVAASEAGDVRSFVQESVGAIAEHDRENGTPYMETLSTYLQE
HCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GCRSQACADTMGLHVTTLRYRLSRIQELFGVDVETPEKRFAVELAIRLHGVIDNRSTAQR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA