Click here to switch to the map view.

The map label for this gene is yecS [C]

Identifier: 86360916

GI number: 86360916

Start: 195399

End: 196058

Strand: Reverse

Name: yecS [C]

Synonym: RHE_PF00185

Alternate gene names: 86360916

Gene position: 196058-195399 (Counterclockwise)

Preceding gene: 86360917

Following gene: 86360915

Centisome position: 30.51

GC content: 65.15

Gene sequence:

>660_bases
ATGTCGGTATGGTCCGGCTATCTGACACTGATCCTTCAGGGCGCCCTGGTGACGCTCGAACTGACGGTCATAGGATCGGC
GCTGGCGCTCGTCATGGCCTTCCTGGCCGGCCTCGGCCGCCTGTCGCGCTTCTTTGCCGTTCGGGCTCTGGCGACCGCCT
ATATCGAATTCTTTCGCGGCACCTCGATCTTCGTCCAGCTCTTCTGGGTTTATTTCGTGCTGCCCTTCGCAGGCCTGACG
CTGACGCCGCTGCAGGCCGGCGTGCTGGCGCTCGGGCTGAATGTCGGTGCCTATGGCGCGGAGGTGGTGCGCGGCGCCGT
CAAGGCCGTCGGGCGCGAACAGTCGGAAGCCTGCATCGCGCTCAACCTGTCGCGCTACCAGCGCATGCGCCACGTCATCC
TGCCGCAGGCGCTGCCGCTGATGCTGCCGACCTTCTGCAACAACGCGATCGAGCTCTTGAAGGGCACGGCCGTCGTGTCG
TTGATCTCGCTGACGGACATGACCTTCCAGGCGCAGGTGGTGCGGGCGCAGACGGGCAATACGCTGGTGCCTTTTGCGGC
GATCCTCATCCTCTATTTCCTCATGGCCTCCGCCATCTCGGCGGCAATGCGCCTGCTGGAGCGGCGGATGACACGCGGCC
TCGACGGCATGAGGACCTGA

Upstream 100 bases:

>100_bases
AAGCTCTGCGCCGCAGCCAAGTAACCTGATGTGAGCACACCGGCCATGCGCCCTGCCATGGCCGGTCCGCCCGCACGATC
TCCAGAGAAGTGAGTTGCCG

Downstream 100 bases:

>100_bases
TCATATGGAATGGGATTGGGAGTTCGTCTGGCAGATCATGCCGACCCTTCTCGAAGGGTTCAAGATCACTATTCTTGCCA
CCATCCTCGGCGCTGCGGTC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSVWSGYLTLILQGALVTLELTVIGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRGTSIFVQLFWVYFVLPFAGLT
LTPLQAGVLALGLNVGAYGAEVVRGAVKAVGREQSEACIALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVVS
LISLTDMTFQAQVVRAQTGNTLVPFAAILILYFLMASAISAAMRLLERRMTRGLDGMRT

Sequences:

>Translated_219_residues
MSVWSGYLTLILQGALVTLELTVIGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRGTSIFVQLFWVYFVLPFAGLT
LTPLQAGVLALGLNVGAYGAEVVRGAVKAVGREQSEACIALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVVS
LISLTDMTFQAQVVRAQTGNTLVPFAAILILYFLMASAISAAMRLLERRMTRGLDGMRT
>Mature_218_residues
SVWSGYLTLILQGALVTLELTVIGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRGTSIFVQLFWVYFVLPFAGLTL
TPLQAGVLALGLNVGAYGAEVVRGAVKAVGREQSEACIALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVVSL
ISLTDMTFQAQVVRAQTGNTLVPFAAILILYFLMASAISAAMRLLERRMTRGLDGMRT

Specific function: Probably part of the binding-protein-dependent transport system y4tEFGH for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=35.1219512195122, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787030, Length=212, Percent_Identity=37.2641509433962, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786873, Length=212, Percent_Identity=29.7169811320755, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788646, Length=221, Percent_Identity=30.316742081448, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI87082239, Length=206, Percent_Identity=33.9805825242718, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1786874, Length=219, Percent_Identity=30.5936073059361, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1788645, Length=224, Percent_Identity=28.125, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787086, Length=213, Percent_Identity=27.2300469483568, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787087, Length=138, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI48994930, Length=136, Percent_Identity=31.6176470588235, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515
- InterPro:   IPR014342 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23767; Mature: 23636

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVWSGYLTLILQGALVTLELTVIGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TSIFVQLFWVYFVLPFAGLTLTPLQAGVLALGLNVGAYGAEVVRGAVKAVGREQSEACIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHE
LNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVVSLISLTDMTFQAQVVRAQTGN
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TLVPFAAILILYFLMASAISAAMRLLERRMTRGLDGMRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SVWSGYLTLILQGALVTLELTVIGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TSIFVQLFWVYFVLPFAGLTLTPLQAGVLALGLNVGAYGAEVVRGAVKAVGREQSEACIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHE
LNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVVSLISLTDMTFQAQVVRAQTGN
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TLVPFAAILILYFLMASAISAAMRLLERRMTRGLDGMRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]