| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is coaBC [H]
Identifier: 85859395
GI number: 85859395
Start: 1601741
End: 1603012
Strand: Direct
Name: coaBC [H]
Synonym: SYN_02177
Alternate gene names: 85859395
Gene position: 1601741-1603012 (Clockwise)
Preceding gene: 85859386
Following gene: 85859396
Centisome position: 50.38
GC content: 50.79
Gene sequence:
>1272_bases ATGCTTAAGGACAAAAAAATAGTTCTGGGAATAACAGGGGGTATAGCGGCGTACAAGGCGGCGGAACTGACTCGACAATT GATTAAAAACGGAGCGGAAGTGAAAGTGATCATGACTCGTCATGCCACGGAGTTCATTACCCCGTTGACGATGCAGACCC TTTCGTGTGGTCCTGTATTTCTTGATATGTTTGCTTGCATCAAAGACTTCGAGATTGCCCATATCGCCCTCGCGGATTAC GCGGACCTTCTGGTCATCGTTCCCGCGACGGCCAATGTGATTGGGAAGATTGCCTCGGGCATCGCGGATGATCTGCTTAC AACAACGGTCATGGCTGCAAAAGCGCCCGTTCTGATCTGTCCAGCAATGAATGTCAACATGTTCGAAAATTCCATCGTTC AGGAAAAAATCAAGGATCTGGGCTCTCATGGATTTCATATTCTATCTCCGGCAGCGGGTGAACTGGCCTGCGGGACAGAG GGCAAGGGGCGGCTTCCCGAGGTGCCTGACATTATGGAAGAAATAGAATATCTGTTAACCGAAAAGGACCTGATGGGGGA ACATATCCTTGTAACGGCGGGGCCGACAAGGGAACCTTTCGATCCCGTTCGATTCATTACCAATTATTCATCAGGAAAAA TGGGATATGCCATCGCGACGGTTGCGCGCCGGAGGGGGGCGACCGTGACCCTGGTCAGCGGCCCGACCCATTTGTCTGTT CCTTCAGGTGTTGAATTTCTATCAGTTTCGACAGCCCGGGAAATGAGGGATGCCGTACTTGCGAATCTGCCGGAAGCGAC GGTGGTGATCAAAGCCGCCGCGGTGGCGGATTACAGACCGGCTGTCCGGGAGCCACAGAAAATCAAGAAAAAGGACGACG ATCTGACGGTAAAACTGGAAAGAAATCCTGATATCATTCAGGAGATCGGAAAGAAGAAGCAGAACCGCATTCTTGTCGGT TTCGCTATGGAGTCTGAACATCTTGTAGAAAATGCAATTGCAAAAATGGTTGGAAAAAATATGGATTTCATCGTTGCCAA CGACCTGACAAAGCAGGGCGCCGGTTTTCAGGGCGACACCAATATCATCAGTATCCTGGACCGCGATGGAGAATTTCAGG AACTGCCGCTCATGGACAAGATCGAGGCGGCCGCGATCATCCTGGACAAGGTGAGGAAGATCCGGAACAGTCAGCTTAAC AATCCCGAAAAAGAGCGGGATCCTTTTTCTGCTTCGTGGAAGACCGCCGGCGATAAAGACCACCTCCAATGA
Upstream 100 bases:
>100_bases CTCAACAAGATTAATTTCTTGAAGTTGCCGGATAGAACTGCTATATTTTGACATTAAAAATAATCCGTGATTACAATTAC TTATCAAAGGAACAAAGAAT
Downstream 100 bases:
>100_bases GTCGTGATTGAGATGAACGAATCGGATATCTTGAAAGACGAATTGTACACGCTGGTCCGTTCCTTAAAAAACCAGATCGA GCTTGCGTGGGAACTTCGAC
Product: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase
Products: NA
Alternate protein names: DNA/pantothenate metabolism flavoprotein; Phosphopantothenoylcysteine decarboxylase; PPCDC; CoaC; Phosphopantothenate--cysteine ligase; CoaB; PPC synthetase; PPCS; Phosphopantothenoylcysteine synthase [H]
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MLKDKKIVLGITGGIAAYKAAELTRQLIKNGAEVKVIMTRHATEFITPLTMQTLSCGPVFLDMFACIKDFEIAHIALADY ADLLVIVPATANVIGKIASGIADDLLTTTVMAAKAPVLICPAMNVNMFENSIVQEKIKDLGSHGFHILSPAAGELACGTE GKGRLPEVPDIMEEIEYLLTEKDLMGEHILVTAGPTREPFDPVRFITNYSSGKMGYAIATVARRRGATVTLVSGPTHLSV PSGVEFLSVSTAREMRDAVLANLPEATVVIKAAAVADYRPAVREPQKIKKKDDDLTVKLERNPDIIQEIGKKKQNRILVG FAMESEHLVENAIAKMVGKNMDFIVANDLTKQGAGFQGDTNIISILDRDGEFQELPLMDKIEAAAIILDKVRKIRNSQLN NPEKERDPFSASWKTAGDKDHLQ
Sequences:
>Translated_423_residues MLKDKKIVLGITGGIAAYKAAELTRQLIKNGAEVKVIMTRHATEFITPLTMQTLSCGPVFLDMFACIKDFEIAHIALADY ADLLVIVPATANVIGKIASGIADDLLTTTVMAAKAPVLICPAMNVNMFENSIVQEKIKDLGSHGFHILSPAAGELACGTE GKGRLPEVPDIMEEIEYLLTEKDLMGEHILVTAGPTREPFDPVRFITNYSSGKMGYAIATVARRRGATVTLVSGPTHLSV PSGVEFLSVSTAREMRDAVLANLPEATVVIKAAAVADYRPAVREPQKIKKKDDDLTVKLERNPDIIQEIGKKKQNRILVG FAMESEHLVENAIAKMVGKNMDFIVANDLTKQGAGFQGDTNIISILDRDGEFQELPLMDKIEAAAIILDKVRKIRNSQLN NPEKERDPFSASWKTAGDKDHLQ >Mature_423_residues MLKDKKIVLGITGGIAAYKAAELTRQLIKNGAEVKVIMTRHATEFITPLTMQTLSCGPVFLDMFACIKDFEIAHIALADY ADLLVIVPATANVIGKIASGIADDLLTTTVMAAKAPVLICPAMNVNMFENSIVQEKIKDLGSHGFHILSPAAGELACGTE GKGRLPEVPDIMEEIEYLLTEKDLMGEHILVTAGPTREPFDPVRFITNYSSGKMGYAIATVARRRGATVTLVSGPTHLSV PSGVEFLSVSTAREMRDAVLANLPEATVVIKAAAVADYRPAVREPQKIKKKDDDLTVKLERNPDIIQEIGKKKQNRILVG FAMESEHLVENAIAKMVGKNMDFIVANDLTKQGAGFQGDTNIISILDRDGEFQELPLMDKIEAAAIILDKVRKIRNSQLN NPEKERDPFSASWKTAGDKDHLQ
Specific function: Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine [H]
COG id: COG0452
COG function: function code H; Phosphopantothenoylcysteine synthetase/decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PPC synthetase family [H]
Homologues:
Organism=Homo sapiens, GI71725351, Length=185, Percent_Identity=34.5945945945946, Blast_Score=104, Evalue=2e-22, Organism=Escherichia coli, GI87082301, Length=395, Percent_Identity=44.0506329113924, Blast_Score=301, Evalue=6e-83, Organism=Caenorhabditis elegans, GI17560194, Length=188, Percent_Identity=28.7234042553192, Blast_Score=72, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322762, Length=199, Percent_Identity=31.1557788944724, Blast_Score=76, Evalue=8e-15, Organism=Drosophila melanogaster, GI24657262, Length=185, Percent_Identity=31.8918918918919, Blast_Score=92, Evalue=5e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005252 - InterPro: IPR007085 - InterPro: IPR003382 [H]
Pfam domain/function: PF04127 DFP; PF02441 Flavoprotein [H]
EC number: =4.1.1.36; =6.3.2.5 [H]
Molecular weight: Translated: 46087; Mature: 46087
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKDKKIVLGITGGIAAYKAAELTRQLIKNGAEVKVIMTRHATEFITPLTMQTLSCGPVF CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHCHHHHHHCCCCHHH LDMFACIKDFEIAHIALADYADLLVIVPATANVIGKIASGIADDLLTTTVMAAKAPVLIC HHHHHHHHCCCCEEEEHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE PAMNVNMFENSIVQEKIKDLGSHGFHILSPAAGELACGTEGKGRLPEVPDIMEEIEYLLT CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHH EKDLMGEHILVTAGPTREPFDPVRFITNYSSGKMGYAIATVARRRGATVTLVSGPTHLSV HHHHCCCEEEEEECCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCEECC PSGVEFLSVSTAREMRDAVLANLPEATVVIKAAAVADYRPAVREPQKIKKKDDDLTVKLE CCCCCEEEHHHHHHHHHHHHHCCCCHHEEEEEHHHHHCCCHHCCCHHHHCCCCCEEEEEC RNPDIIQEIGKKKQNRILVGFAMESEHLVENAIAKMVGKNMDFIVANDLTKQGAGFQGDT CCCHHHHHHCCHHHCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCC NIISILDRDGEFQELPLMDKIEAAAIILDKVRKIRNSQLNNPEKERDPFSASWKTAGDKD CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCC HLQ CCC >Mature Secondary Structure MLKDKKIVLGITGGIAAYKAAELTRQLIKNGAEVKVIMTRHATEFITPLTMQTLSCGPVF CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHCHHHHHHCCCCHHH LDMFACIKDFEIAHIALADYADLLVIVPATANVIGKIASGIADDLLTTTVMAAKAPVLIC HHHHHHHHCCCCEEEEHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE PAMNVNMFENSIVQEKIKDLGSHGFHILSPAAGELACGTEGKGRLPEVPDIMEEIEYLLT CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHH EKDLMGEHILVTAGPTREPFDPVRFITNYSSGKMGYAIATVARRRGATVTLVSGPTHLSV HHHHCCCEEEEEECCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCEECC PSGVEFLSVSTAREMRDAVLANLPEATVVIKAAAVADYRPAVREPQKIKKKDDDLTVKLE CCCCCEEEHHHHHHHHHHHHHCCCCHHEEEEEHHHHHCCCHHCCCHHHHCCCCCEEEEEC RNPDIIQEIGKKKQNRILVGFAMESEHLVENAIAKMVGKNMDFIVANDLTKQGAGFQGDT CCCHHHHHHCCHHHCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCC NIISILDRDGEFQELPLMDKIEAAAIILDKVRKIRNSQLNNPEKERDPFSASWKTAGDKD CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCC HLQ CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9534248; 9384377 [H]