| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is lon1 [H]
Identifier: 85859382
GI number: 85859382
Start: 1581954
End: 1584392
Strand: Direct
Name: lon1 [H]
Synonym: SYN_02787
Alternate gene names: 85859382
Gene position: 1581954-1584392 (Clockwise)
Preceding gene: 85859381
Following gene: 85859383
Centisome position: 49.76
GC content: 45.67
Gene sequence:
>2439_bases ATGTTTGATTTTATAAAAAACAAAGAAAAAAACAGCAATATAAATTCTCTTCCTCTGTTGCCCTTGAGGGATGTTGTCGT ATTTCCACACAGTATCGTTCCTCTTTTTGTAGGAAGGGAGAAATCGATTGCAGCGCTTGAATCAGCGATGAAGGATGAGA AGGGCATTTTTATGGTAGCCCAGAAAAATGCCAAAAAGGATGATCCGGCGGAAGAAGATATATTCCGGATTGGTACGATA GGAATCATCATTCAGTTGTTGCGTCTTCCTGATGGAACTGTAAAAGTTCTGGTTGAAGGAAAAAAACGTGCCGCTATCAA AGAATACGTTCCTAATGAAGAGTATTTTTTTGTTCGTGTTGAGGAAATCGAAGATGCGGAAAACAGGAATGTCGTGAAAA CGGAGGCGCTGATTAGAAGCCTAAACGCTGCTTTCGAAAATTATGTGAAATTAAGCAAAAAAGTCCATGTGGAGATGGTC GGCACCATCGCTGCCATTGATGACCCTTCAAAACTTGCTGATGTGATTTCCTCTCATATCAATCTGAAACTTGAAGACAA GCAGAAAATACTTGAAATAGTTGATGTTAATGAGCGGCTGGAAGCGATCTATACACTGATTCTTTCAGAGATTGAAATTC TCGAGGTCGAGGAAAAGATCAAAAGACGCGTCAAGAAGCAGATGGAAAAAACACAGAAAGACTACTATCTGAATGAACAG ATGCGTGCGATTCAGAAGGAGATGGGAGAAAAGGATGAGTTCAAGAATGAAATCGCCGATCTTGAGAAGCGCCTGAAACA AAAGAAGATGTCCGAAGAGGCCACAAAAAAGGTTAAGCAGGAGATCAAAAAGCTGCAGATGATGGCGCCTATGTCTGCCG AAGCGACTGTAGTCAGGAACTATATCGACTGGATTCTCGATATGCCCTGGTCGGAAAAGACGGAAAATGTCTATACGTTG AAACAGTCGGAAGCTATCCTAGAAGAAGATCATTACGGACTGGAGAAAGTCAAGGAAAGAATTCTCGAGTATCTGGCCGT TCAGATGCTGGTCAAGAAAAACAAAGGGTCGATTCTTTGTCTTGTGGGGCCTCCGGGGGTTGGCAAAACATCGATCGCAA AATCCGTTGCGCGTGCGACAAACCGAAAATTCGTTCGATTGTCTCTGGGCGGCGTAAGGGATGAAGCGGAGATTCGAGGT CATCGCAGGACCTATATCGGCGCCCTTCCAGGAAAGATTGTCCAGCTTTTGAAAAAAGCCGGTTCAAATAATCCCGTGTT CTGTCTGGATGAAGTCGATAAACTGAGCTCAGATTTTCGCGGCGACCCTTCCTCCGCATTGCTGGAAGTGCTCGATCCGG AACAGAATTACGCCTTCAACGACAACTACCTTGAAGTCGACTACGATCTTTCGGATGTGATGTTCATAACGACGGCAAAT GTGCTTCAAACGATTCCCGCTCCTTTGCAGGATCGAATGGAGGTTATCAGGATCGCTGGTTATACAGAGCCTGAGAAGAT GAATATCGCAAAGAGGTTTTTAGTCCACAAGGAAATGGAGGCTAACGGCCTGACTGCAGATAACATCGAATTCACCGACG GCGCGATTCAGACAATCATCCGGCAATATACAAGAGAAGCCGGAGTTAGGAATCTGGAGCGGGAAATTGCATCGATATGC AGAAAGGTAGCCCGTGAAATTGTGACGAGCGGAGGAAAAAACAAGATCCGGATCACGTCCAAAATGGTTCCCAAATATCT CGGGGTTCCCAAACATCGTCATGGTGAGGCAGAAGGGAAGAACGAGATCGGGATGACGGTTGGCTTGGCGTGGACGGAAG TCGGTGGAGAACTTCTTGTTGTCGAGGCTTCCATTGTCAAGGGTACTGGCAAGCTGATCATGACGGGAAAATTGGGGGAA GTCATGCAGGAATCGGCTCAAGCCGCATTAACTTATGTGCGCGCCCGAGCCGATGTTTTCGGATTACCCGAGAATTTCTA TAAGGAAGTGGACATCCATGTCCACGTTCCGGAAGGAGCGATACCGAAAGATGGCCCCTCTGCCGGTATCGCCATGGTTA CTTCGATTACCTCGGCATTTGTCAAGAAAAAAGTACGCGGTGATTTGGCAATGACAGGAGAAATCACCCTTCGGGGCCGC GTCCTGCCTATCGGGGGGTTGAAGGAAAAATTGCTGGCTGCTCACCGGGCAAACCTTAAAACTGTCATTATTCCAAAGGA TAATGAAAAAGATTTAGACGAAGTTCCAGCAAATATTCTGAAGGCTCTTGAAATCATTCGCGTTGATCACGTGGATGAAG TACTTAGAGTGGCTTTAATCAAGGATGATAAGGATGTTGTGGAAAAGTTGTCAGACACACCCTCTTCCTACGACATAACT GATGTGTCTTCTGTAACCCAGCCTCAACTGGCAAGTTGA
Upstream 100 bases:
>100_bases CTTGAATAGAGCACAGCCTATTCTGCTTTTTGAAAAGCAGTCAGAGACAGCTTAAAATTTCAGCGTTAAAGGCTGAAAAC TAAATCGCAGGAAAACAAAT
Downstream 100 bases:
>100_bases TAATAAAGAACAAATTCGCGAAAATAGGGAAAAATTGAGAAAACTTTCAGACATTATTTATTCCTTGACATTGCAGATCA ATACTGCTAAAAGACCTCAC
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La 1 [H]
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MFDFIKNKEKNSNINSLPLLPLRDVVVFPHSIVPLFVGREKSIAALESAMKDEKGIFMVAQKNAKKDDPAEEDIFRIGTI GIIIQLLRLPDGTVKVLVEGKKRAAIKEYVPNEEYFFVRVEEIEDAENRNVVKTEALIRSLNAAFENYVKLSKKVHVEMV GTIAAIDDPSKLADVISSHINLKLEDKQKILEIVDVNERLEAIYTLILSEIEILEVEEKIKRRVKKQMEKTQKDYYLNEQ MRAIQKEMGEKDEFKNEIADLEKRLKQKKMSEEATKKVKQEIKKLQMMAPMSAEATVVRNYIDWILDMPWSEKTENVYTL KQSEAILEEDHYGLEKVKERILEYLAVQMLVKKNKGSILCLVGPPGVGKTSIAKSVARATNRKFVRLSLGGVRDEAEIRG HRRTYIGALPGKIVQLLKKAGSNNPVFCLDEVDKLSSDFRGDPSSALLEVLDPEQNYAFNDNYLEVDYDLSDVMFITTAN VLQTIPAPLQDRMEVIRIAGYTEPEKMNIAKRFLVHKEMEANGLTADNIEFTDGAIQTIIRQYTREAGVRNLEREIASIC RKVAREIVTSGGKNKIRITSKMVPKYLGVPKHRHGEAEGKNEIGMTVGLAWTEVGGELLVVEASIVKGTGKLIMTGKLGE VMQESAQAALTYVRARADVFGLPENFYKEVDIHVHVPEGAIPKDGPSAGIAMVTSITSAFVKKKVRGDLAMTGEITLRGR VLPIGGLKEKLLAAHRANLKTVIIPKDNEKDLDEVPANILKALEIIRVDHVDEVLRVALIKDDKDVVEKLSDTPSSYDIT DVSSVTQPQLAS
Sequences:
>Translated_812_residues MFDFIKNKEKNSNINSLPLLPLRDVVVFPHSIVPLFVGREKSIAALESAMKDEKGIFMVAQKNAKKDDPAEEDIFRIGTI GIIIQLLRLPDGTVKVLVEGKKRAAIKEYVPNEEYFFVRVEEIEDAENRNVVKTEALIRSLNAAFENYVKLSKKVHVEMV GTIAAIDDPSKLADVISSHINLKLEDKQKILEIVDVNERLEAIYTLILSEIEILEVEEKIKRRVKKQMEKTQKDYYLNEQ MRAIQKEMGEKDEFKNEIADLEKRLKQKKMSEEATKKVKQEIKKLQMMAPMSAEATVVRNYIDWILDMPWSEKTENVYTL KQSEAILEEDHYGLEKVKERILEYLAVQMLVKKNKGSILCLVGPPGVGKTSIAKSVARATNRKFVRLSLGGVRDEAEIRG HRRTYIGALPGKIVQLLKKAGSNNPVFCLDEVDKLSSDFRGDPSSALLEVLDPEQNYAFNDNYLEVDYDLSDVMFITTAN VLQTIPAPLQDRMEVIRIAGYTEPEKMNIAKRFLVHKEMEANGLTADNIEFTDGAIQTIIRQYTREAGVRNLEREIASIC RKVAREIVTSGGKNKIRITSKMVPKYLGVPKHRHGEAEGKNEIGMTVGLAWTEVGGELLVVEASIVKGTGKLIMTGKLGE VMQESAQAALTYVRARADVFGLPENFYKEVDIHVHVPEGAIPKDGPSAGIAMVTSITSAFVKKKVRGDLAMTGEITLRGR VLPIGGLKEKLLAAHRANLKTVIIPKDNEKDLDEVPANILKALEIIRVDHVDEVLRVALIKDDKDVVEKLSDTPSSYDIT DVSSVTQPQLAS >Mature_812_residues MFDFIKNKEKNSNINSLPLLPLRDVVVFPHSIVPLFVGREKSIAALESAMKDEKGIFMVAQKNAKKDDPAEEDIFRIGTI GIIIQLLRLPDGTVKVLVEGKKRAAIKEYVPNEEYFFVRVEEIEDAENRNVVKTEALIRSLNAAFENYVKLSKKVHVEMV GTIAAIDDPSKLADVISSHINLKLEDKQKILEIVDVNERLEAIYTLILSEIEILEVEEKIKRRVKKQMEKTQKDYYLNEQ MRAIQKEMGEKDEFKNEIADLEKRLKQKKMSEEATKKVKQEIKKLQMMAPMSAEATVVRNYIDWILDMPWSEKTENVYTL KQSEAILEEDHYGLEKVKERILEYLAVQMLVKKNKGSILCLVGPPGVGKTSIAKSVARATNRKFVRLSLGGVRDEAEIRG HRRTYIGALPGKIVQLLKKAGSNNPVFCLDEVDKLSSDFRGDPSSALLEVLDPEQNYAFNDNYLEVDYDLSDVMFITTAN VLQTIPAPLQDRMEVIRIAGYTEPEKMNIAKRFLVHKEMEANGLTADNIEFTDGAIQTIIRQYTREAGVRNLEREIASIC RKVAREIVTSGGKNKIRITSKMVPKYLGVPKHRHGEAEGKNEIGMTVGLAWTEVGGELLVVEASIVKGTGKLIMTGKLGE VMQESAQAALTYVRARADVFGLPENFYKEVDIHVHVPEGAIPKDGPSAGIAMVTSITSAFVKKKVRGDLAMTGEITLRGR VLPIGGLKEKLLAAHRANLKTVIIPKDNEKDLDEVPANILKALEIIRVDHVDEVLRVALIKDDKDVVEKLSDTPSSYDIT DVSSVTQPQLAS
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=775, Percent_Identity=39.4838709677419, Blast_Score=536, Evalue=1e-152, Organism=Homo sapiens, GI21396489, Length=624, Percent_Identity=42.6282051282051, Blast_Score=526, Evalue=1e-149, Organism=Escherichia coli, GI1786643, Length=773, Percent_Identity=57.6972833117723, Blast_Score=912, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=657, Percent_Identity=40.3348554033485, Blast_Score=487, Evalue=1e-137, Organism=Caenorhabditis elegans, GI17556486, Length=553, Percent_Identity=40.1446654611212, Blast_Score=431, Evalue=1e-120, Organism=Saccharomyces cerevisiae, GI6319449, Length=728, Percent_Identity=38.8736263736264, Blast_Score=503, Evalue=1e-143, Organism=Drosophila melanogaster, GI221513036, Length=692, Percent_Identity=42.0520231213873, Blast_Score=522, Evalue=1e-148, Organism=Drosophila melanogaster, GI24666867, Length=642, Percent_Identity=43.9252336448598, Blast_Score=521, Evalue=1e-148,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 91038; Mature: 91038
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDFIKNKEKNSNINSLPLLPLRDVVVFPHSIVPLFVGREKSIAALESAMKDEKGIFMVA CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHEEECCCHHHHHHHHHHCCCCCEEEEE QKNAKKDDPAEEDIFRIGTIGIIIQLLRLPDGTVKVLVEGKKRAAIKEYVPNEEYFFVRV ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEE EEIEDAENRNVVKTEALIRSLNAAFENYVKLSKKVHVEMVGTIAAIDDPSKLADVISSHI EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHHHHC NLKLEDKQKILEIVDVNERLEAIYTLILSEIEILEVEEKIKRRVKKQMEKTQKDYYLNEQ CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MRAIQKEMGEKDEFKNEIADLEKRLKQKKMSEEATKKVKQEIKKLQMMAPMSAEATVVRN HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH YIDWILDMPWSEKTENVYTLKQSEAILEEDHYGLEKVKERILEYLAVQMLVKKNKGSILC HHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE LVGPPGVGKTSIAKSVARATNRKFVRLSLGGVRDEAEIRGHRRTYIGALPGKIVQLLKKA EECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCHHEEECCCHHHHHHHHHC GSNNPVFCLDEVDKLSSDFRGDPSSALLEVLDPEQNYAFNDNYLEVDYDLSDVMFITTAN CCCCCEEEECCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEHHHH VLQTIPAPLQDRMEVIRIAGYTEPEKMNIAKRFLVHKEMEANGLTADNIEFTDGAIQTII HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH RQYTREAGVRNLEREIASICRKVAREIVTSGGKNKIRITSKMVPKYLGVPKHRHGEAEGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCC NEIGMTVGLAWTEVGGELLVVEASIVKGTGKLIMTGKLGEVMQESAQAALTYVRARADVF CCCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHC GLPENFYKEVDIHVHVPEGAIPKDGPSAGIAMVTSITSAFVKKKVRGDLAMTGEITLRGR CCCHHHHCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEE VLPIGGLKEKLLAAHRANLKTVIIPKDNEKDLDEVPANILKALEIIRVDHVDEVLRVALI EEECCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDDKDVVEKLSDTPSSYDITDVSSVTQPQLAS CCCHHHHHHHHCCCCCCCCCCCHHCCCCCCCC >Mature Secondary Structure MFDFIKNKEKNSNINSLPLLPLRDVVVFPHSIVPLFVGREKSIAALESAMKDEKGIFMVA CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHEEECCCHHHHHHHHHHCCCCCEEEEE QKNAKKDDPAEEDIFRIGTIGIIIQLLRLPDGTVKVLVEGKKRAAIKEYVPNEEYFFVRV ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEE EEIEDAENRNVVKTEALIRSLNAAFENYVKLSKKVHVEMVGTIAAIDDPSKLADVISSHI EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHHHHC NLKLEDKQKILEIVDVNERLEAIYTLILSEIEILEVEEKIKRRVKKQMEKTQKDYYLNEQ CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MRAIQKEMGEKDEFKNEIADLEKRLKQKKMSEEATKKVKQEIKKLQMMAPMSAEATVVRN HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH YIDWILDMPWSEKTENVYTLKQSEAILEEDHYGLEKVKERILEYLAVQMLVKKNKGSILC HHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE LVGPPGVGKTSIAKSVARATNRKFVRLSLGGVRDEAEIRGHRRTYIGALPGKIVQLLKKA EECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCHHEEECCCHHHHHHHHHC GSNNPVFCLDEVDKLSSDFRGDPSSALLEVLDPEQNYAFNDNYLEVDYDLSDVMFITTAN CCCCCEEEECCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEHHHH VLQTIPAPLQDRMEVIRIAGYTEPEKMNIAKRFLVHKEMEANGLTADNIEFTDGAIQTII HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH RQYTREAGVRNLEREIASICRKVAREIVTSGGKNKIRITSKMVPKYLGVPKHRHGEAEGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCC NEIGMTVGLAWTEVGGELLVVEASIVKGTGKLIMTGKLGEVMQESAQAALTYVRARADVF CCCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHC GLPENFYKEVDIHVHVPEGAIPKDGPSAGIAMVTSITSAFVKKKVRGDLAMTGEITLRGR CCCHHHHCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEE VLPIGGLKEKLLAAHRANLKTVIIPKDNEKDLDEVPANILKALEIIRVDHVDEVLRVALI EEECCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDDKDVVEKLSDTPSSYDITDVSSVTQPQLAS CCCHHHHHHHHCCCCCCCCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA