Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
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Accession | NC_007759 |
Length | 3,179,300 |
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The map label for this gene is ygfS [C]
Identifier: 85859263
GI number: 85859263
Start: 1449982
End: 1450578
Strand: Direct
Name: ygfS [C]
Synonym: SYN_03219
Alternate gene names: 85859263
Gene position: 1449982-1450578 (Clockwise)
Preceding gene: 85859262
Following gene: 85859266
Centisome position: 45.61
GC content: 53.27
Gene sequence:
>597_bases TTGCTGAAGACTTTGAGAAGAGAGGTATTTTCTAAAATGGCCAAGATAAAGAAAAAAATAAAGACGATCAAGATTGACGA GTCGAAATGCAATGGCTGCCGGGCATGCGAGATGATCTGCTCCGCCTTCCATTCCACTCCGAAGTACAGCACCATCAATC CGGAGAGGTCGCGCATCCGGATGTATCGCGACGTGAGAAACGACCTGTATCTTCCCGTTTATGCCGGCGAGTATACAGCC GCCGAGTGCATGGGCAGAGACGTCTATGTCATTGACGGCAGGGAGTACGAAGAGTGCGCCTTCTGCCGGGCGGCCTGCCC GTCCCGGGACATTTTCCATGAACCCGATTCCGGCCTTCCGCTCAAATGCGATATGTGTGAAGACGACCCTCCCCAGGAAG TTCCCCTCTGTGTCAAGTGGTGCCTTAATGACGCCCTGATTTACGAGGAGCGGGAAGAGGAAGTCGAGGAAGGGATTGAG ATGGAGGACGTGGAGACCGGATTGTTAGCCATGGTGGACAAATACGGCCTGCAGAAGGTCCTGGATACTGCCGCCCGGGT AGCCAAAAAGGGCGAATCCGTCGAATCGAAAAAATAA
Upstream 100 bases:
>100_bases TACGAAAAGCAGCTTCTGGAAGGCTACCAGGCATACAAGGGCTGGGATACGGAAGGCATTCCGACAAAAGAGTCTCTGGA GTCACTGGATCTGGGTTTCG
Downstream 100 bases:
>100_bases AAAAGGAAAAGCGCAATAAAGGGCTTGGTCAAATTAAGGCTAAGCCCTTTATTGCCACATAAAATATTTAATCTATTCTT TTGTCTTTTTTAGCTTCGCA
Product: 4Fe-4S protein
Products: NA
Alternate protein names: Ferredoxin
Number of amino acids: Translated: 198; Mature: 198
Protein sequence:
>198_residues MLKTLRREVFSKMAKIKKKIKTIKIDESKCNGCRACEMICSAFHSTPKYSTINPERSRIRMYRDVRNDLYLPVYAGEYTA AECMGRDVYVIDGREYEECAFCRAACPSRDIFHEPDSGLPLKCDMCEDDPPQEVPLCVKWCLNDALIYEEREEEVEEGIE MEDVETGLLAMVDKYGLQKVLDTAARVAKKGESVESKK
Sequences:
>Translated_198_residues MLKTLRREVFSKMAKIKKKIKTIKIDESKCNGCRACEMICSAFHSTPKYSTINPERSRIRMYRDVRNDLYLPVYAGEYTA AECMGRDVYVIDGREYEECAFCRAACPSRDIFHEPDSGLPLKCDMCEDDPPQEVPLCVKWCLNDALIYEEREEEVEEGIE MEDVETGLLAMVDKYGLQKVLDTAARVAKKGESVESKK >Mature_198_residues MLKTLRREVFSKMAKIKKKIKTIKIDESKCNGCRACEMICSAFHSTPKYSTINPERSRIRMYRDVRNDLYLPVYAGEYTA AECMGRDVYVIDGREYEECAFCRAACPSRDIFHEPDSGLPLKCDMCEDDPPQEVPLCVKWCLNDALIYEEREEEVEEGIE MEDVETGLLAMVDKYGLQKVLDTAARVAKKGESVESKK
Specific function: Unknown
COG id: COG1142
COG function: function code C; Fe-S-cluster-containing hydrogenase components 2
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22705; Mature: 22705
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00697 DNA_LIGASE_A1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.1 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 10.1 %Cys+Met (Translated Protein) 6.1 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 10.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTLRREVFSKMAKIKKKIKTIKIDESKCNGCRACEMICSAFHSTPKYSTINPERSRIR CHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH MYRDVRNDLYLPVYAGEYTAAECMGRDVYVIDGREYEECAFCRAACPSRDIFHEPDSGLP HHHHHHHCEEEEEECCCHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCC LKCDMCEDDPPQEVPLCVKWCLNDALIYEEREEEVEEGIEMEDVETGLLAMVDKYGLQKV EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH LDTAARVAKKGESVESKK HHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLKTLRREVFSKMAKIKKKIKTIKIDESKCNGCRACEMICSAFHSTPKYSTINPERSRIR CHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH MYRDVRNDLYLPVYAGEYTAAECMGRDVYVIDGREYEECAFCRAACPSRDIFHEPDSGLP HHHHHHHCEEEEEECCCHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCC LKCDMCEDDPPQEVPLCVKWCLNDALIYEEREEEVEEGIEMEDVETGLLAMVDKYGLQKV EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH LDTAARVAKKGESVESKK HHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA