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The map label for this gene is hdrA [H]

Identifier: 85859241

GI number: 85859241

Start: 1424164

End: 1424895

Strand: Direct

Name: hdrA [H]

Synonym: SYN_03216

Alternate gene names: 85859241

Gene position: 1424164-1424895 (Clockwise)

Preceding gene: 85859240

Following gene: 85859242

Centisome position: 44.79

GC content: 55.05

Gene sequence:

>732_bases
ATGAGGCTTGTCCGTGTCATGTGCACGGGACGGGTGGACTTTACCCATATATTACGATCCTTTGCCGACGGATGTGACGG
GGTGTTCGTAGGTGGTTGTCATCTCGGCGAGTGCAATTACATCACGAACGGGAATTATCACGCGCAGAACATGGTGGCTC
TGACAAAGAAGCTGCTGGAGCGCATCGGGCTAAACCCCGAGCGCCTGCGGATGGCTTTCATGTCCGGTGCGGAAGCGAAC
CTTTACACGGAACACGTGAACAGTTTTGTCAAGAAGATCAAGGAACTCGGTCCTCTTGGCGTGATGGAGGGAATCGGGAA
GGAGGATCTGGACGCCCGTCTTGCCGAACTGATCAGGCAGGTCCCCTACATCAAGATCATGACGAATGAGAAGCTGGCGA
AGCAGCTGACGAATCACGAGGATGTGGAGAAGCTTTTCACCACGGAGGACGTGGAGAAGTTATTCAGCGAGAAGATCTCA
TACTATATTGATCCGGAAAAGTGCCAGGCCTGTATGACCTGCGCGCGGAGATGCCCGATGGATGCGATCATCAGCGCCAA
GAAGGAGGTTCACATCATTGAGCAGGACAAGTGTATCCGCTGCGGGGCATGCTTTGCAGCCTGTCCGCCTCAATTCAGCG
CCATCGTGAAGCTGGTCGGCCAGCCTGCTCCGCCCCCTCTGCCTGAAGGCCAGCGAGCGGTCGTCAAAAAGAGCAAGGAA
GCAACTGCATAA

Upstream 100 bases:

>100_bases
TCTTAGATTTAAGCCCCGGATCATCGGTTTCGTGTGCCACTGGTGAGCATACGGCGCCGCTGACCTGGCTGGAGTTTCCA
GACTGCAATATACATCAGAA

Downstream 100 bases:

>100_bases
AATGCAGAAATAGTTAATTCCGGGTGACGAAGGTTTGAACCTTCGTCACCCGATAGACTGAAATGGGATTTACCCGATAA
GGGGTGACAAAATTTTTTTA

Product: methyl-viologen-reducing hydrogenase subunit delta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRLVRVMCTGRVDFTHILRSFADGCDGVFVGGCHLGECNYITNGNYHAQNMVALTKKLLERIGLNPERLRMAFMSGAEAN
LYTEHVNSFVKKIKELGPLGVMEGIGKEDLDARLAELIRQVPYIKIMTNEKLAKQLTNHEDVEKLFTTEDVEKLFSEKIS
YYIDPEKCQACMTCARRCPMDAIISAKKEVHIIEQDKCIRCGACFAACPPQFSAIVKLVGQPAPPPLPEGQRAVVKKSKE
ATA

Sequences:

>Translated_243_residues
MRLVRVMCTGRVDFTHILRSFADGCDGVFVGGCHLGECNYITNGNYHAQNMVALTKKLLERIGLNPERLRMAFMSGAEAN
LYTEHVNSFVKKIKELGPLGVMEGIGKEDLDARLAELIRQVPYIKIMTNEKLAKQLTNHEDVEKLFTTEDVEKLFSEKIS
YYIDPEKCQACMTCARRCPMDAIISAKKEVHIIEQDKCIRCGACFAACPPQFSAIVKLVGQPAPPPLPEGQRAVVKKSKE
ATA
>Mature_243_residues
MRLVRVMCTGRVDFTHILRSFADGCDGVFVGGCHLGECNYITNGNYHAQNMVALTKKLLERIGLNPERLRMAFMSGAEAN
LYTEHVNSFVKKIKELGPLGVMEGIGKEDLDARLAELIRQVPYIKIMTNEKLAKQLTNHEDVEKLFTTEDVEKLFSEKIS
YYIDPEKCQACMTCARRCPMDAIISAKKEVHIIEQDKCIRCGACFAACPPQFSAIVKLVGQPAPPPLPEGQRAVVKKSKE
ATA

Specific function: Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). May act as the catalytic subunit [H]

COG id: COG1908

COG function: function code C; Coenzyme F420-reducing hydrogenase, delta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003953
- InterPro:   IPR003813
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00890 FAD_binding_2; PF00037 Fer4; PF02662 FlpD [H]

EC number: =1.8.98.1 [H]

Molecular weight: Translated: 27081; Mature: 27081

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVRVMCTGRVDFTHILRSFADGCDGVFVGGCHLGECNYITNGNYHAQNMVALTKKLLE
CCEEEEEECCCCCHHHHHHHHHCCCCCEEECCEEECCCCEEECCCCCHHHHHHHHHHHHH
RIGLNPERLRMAFMSGAEANLYTEHVNSFVKKIKELGPLGVMEGIGKEDLDARLAELIRQ
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHH
VPYIKIMTNEKLAKQLTNHEDVEKLFTTEDVEKLFSEKISYYIDPEKCQACMTCARRCPM
CCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHCCH
DAIISAKKEVHIIEQDKCIRCGACFAACPPQFSAIVKLVGQPAPPPLPEGQRAVVKKSKE
HHHHHCHHHEEEECCCCCHHHCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCC
ATA
CCC
>Mature Secondary Structure
MRLVRVMCTGRVDFTHILRSFADGCDGVFVGGCHLGECNYITNGNYHAQNMVALTKKLLE
CCEEEEEECCCCCHHHHHHHHHCCCCCEEECCEEECCCCEEECCCCCHHHHHHHHHHHHH
RIGLNPERLRMAFMSGAEANLYTEHVNSFVKKIKELGPLGVMEGIGKEDLDARLAELIRQ
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHH
VPYIKIMTNEKLAKQLTNHEDVEKLFTTEDVEKLFSEKISYYIDPEKCQACMTCARRCPM
CCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHCCH
DAIISAKKEVHIIEQDKCIRCGACFAACPPQFSAIVKLVGQPAPPPLPEGQRAVVKKSKE
HHHHHCHHHEEEECCCCCHHHCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCC
ATA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]