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The map label for this gene is fliR [H]

Identifier: 85859182

GI number: 85859182

Start: 1358490

End: 1359269

Strand: Direct

Name: fliR [H]

Synonym: SYN_02833

Alternate gene names: 85859182

Gene position: 1358490-1359269 (Clockwise)

Preceding gene: 85859181

Following gene: 85859183

Centisome position: 42.73

GC content: 46.28

Gene sequence:

>780_bases
ATGAACCTGCCTGTCATTACTCCGGAGCAGATTGCCTGTCTGATTTTCATTTTTTTGCGAGTCAGCTCCATGATCGTCGT
CATGCCCATCTTCGGAGGCGACAAGACAATTCCCGTGGGCATCAAAGGAGGGCTGTCCCTTCTGATTACCTTCCTTCTGT
TTCCTTTTGTGCGAATGGATTTCGGCTTTCAGTTGATGGAGCTCACCCCAATGGTCGTAATCATGATCGGTGAAATCCTC
ATCGGGGTGATTATCGGTTTTGTGGCCCGTTTCATCTTTGCCGGAATTCAGTTTGCAGGAGAATTAATCGGGTTTCAAAT
GGGATTTTCCGTCGTCAACATTATCGATCCCGTAACCAGCACTCAGGTTTCCCTGATATCGCAGCTGAAATATTTCCTGG
CCATGCTGGTCTTTCTGGCTGTAAACGCTCACCACATCTTTCTTTCCGCCATGGCGGAAAGTTTTGTGAGGATTTCGCCG
ATGCAGTTTCATCTGACAGAAAGGGTGATTGCACCCTTATGTCTTCTTTCAATGGAGGTTTTCATAATTGCTGTAAAAAT
CAGTGCTCCGGTGGTAGCCGTGCTCATTTTTACTCATGTCGCCCTGGGTGTTGTGGCAAGGACGGTTCCCCAAATCAATA
TCTTTATTGTCGGATTCCCTCTACAGATTGCCTTGGGATTAATTTTTCTGGGATTGAGCGCACCGATTTTTGTCAATTAT
TGCATCCGACTTTTCAACGGCTTGGCAAAACAGATCCATATGCTTGTTCTGCTGATGTGA

Upstream 100 bases:

>100_bases
TCTTCTGCTTACATTTACCCATAACCTTTATTCCAACATCCCCAATTATGTAAAATAAAGATCAGGCAATAGACGTGTTT
TCAACCCCCGGGATATTCTC

Downstream 100 bases:

>100_bases
AATAAATGTAAAATTAAAACTGTCGCTAAGCAAGGCCGTTTTTTCCTCTTAATCATGAAAAGGCCTGTTTCTTATCAAAA
AAGTGTGTTTCATGTCTCCG

Product: flagellar biosynthetic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNLPVITPEQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFGFQLMELTPMVVIMIGEIL
IGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTSTQVSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISP
MQFHLTERVIAPLCLLSMEVFIIAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNY
CIRLFNGLAKQIHMLVLLM

Sequences:

>Translated_259_residues
MNLPVITPEQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFGFQLMELTPMVVIMIGEIL
IGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTSTQVSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISP
MQFHLTERVIAPLCLLSMEVFIIAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNY
CIRLFNGLAKQIHMLVLLM
>Mature_259_residues
MNLPVITPEQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFGFQLMELTPMVVIMIGEIL
IGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTSTQVSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISP
MQFHLTERVIAPLCLLSMEVFIIAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNY
CIRLFNGLAKQIHMLVLLM

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=249, Percent_Identity=28.5140562248996, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28459; Mature: 28459

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPVITPEQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMD
CCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHH
FGFQLMELTPMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TQVSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLSMEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FIIAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNY
HHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHH
CIRLFNGLAKQIHMLVLLM
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLPVITPEQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMD
CCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHH
FGFQLMELTPMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TQVSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLSMEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FIIAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNY
HHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHH
CIRLFNGLAKQIHMLVLLM
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]