Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

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The map label for this gene is capK [H]

Identifier: 85858273

GI number: 85858273

Start: 433601

End: 435073

Strand: Direct

Name: capK [H]

Synonym: SYN_01100

Alternate gene names: 85858273

Gene position: 433601-435073 (Clockwise)

Preceding gene: 85858272

Following gene: 85858274

Centisome position: 13.64

GC content: 43.18

Gene sequence:

>1473_bases
TTGTCGCGAATCATACACCTGAACATGCCGCCAAGGCCATATGGGATGCATGCAAAATTGCACTGGGAACAAAGCACTTG
TAAGGTGAAGCCTGCCGGCGCCATGTATACGAATTGGTTGGAAAAGCGACTCTACCAGGGAGTCTTTTATAAGATAAACC
TGTTCAACAAGGGAATATCTGAGGAAATGCTTGCGACCTATTACGGAAGGGATCTTTTAACTCAGAATCAAATAGCAGAA
ATCCAAAATGAAAAGCTAAGAGAATTCTTGAAGTATTGTAATGACAACTCTCCCTATTACCACAAACAGATTCAAGAACA
TTCCGTGAATCTGAGAGCCGAAGACATGTTTGCGGAACTTCGAAAGATTCCATCCATAAGTAAAATGGAAATTACCCGGA
ATTTGGAAAGCATCTTTTCTAGAGAATATGTGGGAAGAAAAGGTTTGATTGCAAAGTTTACGGGAGGATCGACGGGGACT
CCGTTGGAAATCTGGGGGAATCATGACGATTATCGCGAAAATAATGTAATCATAGCCAGGCAGAGACGATGGGTAAACTG
GGTGGGAGGAATGAAAACGATGACTTTGTTTGGCGGATCTGTCGATCTACCAAGCAGTCTTCGGCGCATTACGAAAAGGG
TTCTCATCAACGATACCATATTGAACATAATGGACCGGTCGAATACCGATTTTTCGTCAATTGTAGCCGTTATTCGAAAG
AAGACCCCTCACGCTTTAATAGCATATTTCAGCATACTCAAAGAATTGTCTCAGGTTTGTGAATGTGAAAAGCGGCCATT
ATCGGGTATCAACGTTGCCATTGCCTGTGCGGAACCGATAGAGGAACGTGCACGACGACATGCTGAACAATGGCTTAATG
CACCGATCTACTTTCAGTATGGCACCAGAGAAACCGGAACCTTCGCACAGGAATGCAGAGCGCAGAATGGTTATCATTAT
GCACAGGATATAATCTTTTGCGAGGTTCTTGACGATGACGACAATCCTTGTGAGTTCGGTAATCTGGTGATTACGTGGTT
CGCAAACAAGGTCGTGCCACTCGTTCGTTACAAAATCGGTGATTCCGCTTCCATCGTGACTGAAGCCTGTGCATGTGGGT
TGCCCTACCACAGGATCGATAGAATAGAAGGGCGCATGGCTTCCATGATCATAACGCCTGACAATCGCAGGATCACATCT
CTTATATTCCCACACTTGTTGAAAGATTATGACTGGATCATTGAATATCAGGCTGAACAAACTGCGAAAGACCACATTGT
CATAAGAATAAGAACCAATAGGAAAAGCAGTATTTCGGATGCGTTAGAAGACATCAAAAAGAAATTCAATGAACTGCTTG
GTAGAGACATATGTTTGGAATTCAAGATAAATGAAGATTTCCTCAAAGTTCCCACTGGAAAGCACCTATACTTTGTATCC
CATCTGAATTCGATTCCGGGATGCACAGAGTAA

Upstream 100 bases:

>100_bases
GTTTTCGATCCTCTGCAGCGGGACAGCATCGTTCGAACTTTGACAAAGGCCCTGAGCAGTGTGGACGACTTGCCACGGAT
GGGCTCCGAATCACGTTCAA

Downstream 100 bases:

>100_bases
TGACTGCCGTCCCTGAAAATCAAAAAATCAAGATCTGACCCTGAAATTTCATGTCCTCCTTCATGAAAATCCTTTTCGTT
CATAACGACTATGCCAAGCC

Product: coenzyme F390 synthetase / phenylacetate-coenzyme A ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MSRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGISEEMLATYYGRDLLTQNQIAE
IQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAELRKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGT
PLEIWGNHDDYRENNVIIARQRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK
KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQYGTRETGTFAQECRAQNGYHY
AQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIGDSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITS
LIFPHLLKDYDWIIEYQAEQTAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS
HLNSIPGCTE

Sequences:

>Translated_490_residues
MSRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGISEEMLATYYGRDLLTQNQIAE
IQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAELRKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGT
PLEIWGNHDDYRENNVIIARQRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK
KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQYGTRETGTFAQECRAQNGYHY
AQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIGDSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITS
LIFPHLLKDYDWIIEYQAEQTAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS
HLNSIPGCTE
>Mature_489_residues
SRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGISEEMLATYYGRDLLTQNQIAEI
QNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAELRKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGTP
LEIWGNHDDYRENNVIIARQRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRKK
TPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQYGTRETGTFAQECRAQNGYHYA
QDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIGDSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITSL
IFPHLLKDYDWIIEYQAEQTAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVSH
LNSIPGCTE

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1541

COG function: function code H; Coenzyme F390 synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56683; Mature: 56552

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGIS
CCEEEEECCCCCCCCCCEEEEECCCCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCH
EEMLATYYGRDLLTQNQIAEIQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAEL
HHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHH
RKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGTPLEIWGNHDDYRENNVIIAR
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEEEE
QRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK
CCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQY
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEE
GTRETGTFAQECRAQNGYHYAQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIG
CCCCCCHHHHHHHHCCCCEEHHHEEEEEEECCCCCCCCCCCEEEEEHHHHHEEHHEEECC
DSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITSLIFPHLLKDYDWIIEYQAEQ
CCHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC
TAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCEEEEEE
HLNSIPGCTE
HHCCCCCCCC
>Mature Secondary Structure 
SRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGIS
CEEEEECCCCCCCCCCEEEEECCCCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCH
EEMLATYYGRDLLTQNQIAEIQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAEL
HHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHH
RKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGTPLEIWGNHDDYRENNVIIAR
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEEEE
QRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK
CCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQY
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEE
GTRETGTFAQECRAQNGYHYAQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIG
CCCCCCHHHHHHHHCCCCEEHHHEEEEEEECCCCCCCCCCCEEEEEHHHHHEEHHEEECC
DSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITSLIFPHLLKDYDWIIEYQAEQ
CCHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC
TAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCEEEEEE
HLNSIPGCTE
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]