Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
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Accession | NC_007759 |
Length | 3,179,300 |
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The map label for this gene is capK [H]
Identifier: 85858273
GI number: 85858273
Start: 433601
End: 435073
Strand: Direct
Name: capK [H]
Synonym: SYN_01100
Alternate gene names: 85858273
Gene position: 433601-435073 (Clockwise)
Preceding gene: 85858272
Following gene: 85858274
Centisome position: 13.64
GC content: 43.18
Gene sequence:
>1473_bases TTGTCGCGAATCATACACCTGAACATGCCGCCAAGGCCATATGGGATGCATGCAAAATTGCACTGGGAACAAAGCACTTG TAAGGTGAAGCCTGCCGGCGCCATGTATACGAATTGGTTGGAAAAGCGACTCTACCAGGGAGTCTTTTATAAGATAAACC TGTTCAACAAGGGAATATCTGAGGAAATGCTTGCGACCTATTACGGAAGGGATCTTTTAACTCAGAATCAAATAGCAGAA ATCCAAAATGAAAAGCTAAGAGAATTCTTGAAGTATTGTAATGACAACTCTCCCTATTACCACAAACAGATTCAAGAACA TTCCGTGAATCTGAGAGCCGAAGACATGTTTGCGGAACTTCGAAAGATTCCATCCATAAGTAAAATGGAAATTACCCGGA ATTTGGAAAGCATCTTTTCTAGAGAATATGTGGGAAGAAAAGGTTTGATTGCAAAGTTTACGGGAGGATCGACGGGGACT CCGTTGGAAATCTGGGGGAATCATGACGATTATCGCGAAAATAATGTAATCATAGCCAGGCAGAGACGATGGGTAAACTG GGTGGGAGGAATGAAAACGATGACTTTGTTTGGCGGATCTGTCGATCTACCAAGCAGTCTTCGGCGCATTACGAAAAGGG TTCTCATCAACGATACCATATTGAACATAATGGACCGGTCGAATACCGATTTTTCGTCAATTGTAGCCGTTATTCGAAAG AAGACCCCTCACGCTTTAATAGCATATTTCAGCATACTCAAAGAATTGTCTCAGGTTTGTGAATGTGAAAAGCGGCCATT ATCGGGTATCAACGTTGCCATTGCCTGTGCGGAACCGATAGAGGAACGTGCACGACGACATGCTGAACAATGGCTTAATG CACCGATCTACTTTCAGTATGGCACCAGAGAAACCGGAACCTTCGCACAGGAATGCAGAGCGCAGAATGGTTATCATTAT GCACAGGATATAATCTTTTGCGAGGTTCTTGACGATGACGACAATCCTTGTGAGTTCGGTAATCTGGTGATTACGTGGTT CGCAAACAAGGTCGTGCCACTCGTTCGTTACAAAATCGGTGATTCCGCTTCCATCGTGACTGAAGCCTGTGCATGTGGGT TGCCCTACCACAGGATCGATAGAATAGAAGGGCGCATGGCTTCCATGATCATAACGCCTGACAATCGCAGGATCACATCT CTTATATTCCCACACTTGTTGAAAGATTATGACTGGATCATTGAATATCAGGCTGAACAAACTGCGAAAGACCACATTGT CATAAGAATAAGAACCAATAGGAAAAGCAGTATTTCGGATGCGTTAGAAGACATCAAAAAGAAATTCAATGAACTGCTTG GTAGAGACATATGTTTGGAATTCAAGATAAATGAAGATTTCCTCAAAGTTCCCACTGGAAAGCACCTATACTTTGTATCC CATCTGAATTCGATTCCGGGATGCACAGAGTAA
Upstream 100 bases:
>100_bases GTTTTCGATCCTCTGCAGCGGGACAGCATCGTTCGAACTTTGACAAAGGCCCTGAGCAGTGTGGACGACTTGCCACGGAT GGGCTCCGAATCACGTTCAA
Downstream 100 bases:
>100_bases TGACTGCCGTCCCTGAAAATCAAAAAATCAAGATCTGACCCTGAAATTTCATGTCCTCCTTCATGAAAATCCTTTTCGTT CATAACGACTATGCCAAGCC
Product: coenzyme F390 synthetase / phenylacetate-coenzyme A ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MSRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGISEEMLATYYGRDLLTQNQIAE IQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAELRKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGT PLEIWGNHDDYRENNVIIARQRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQYGTRETGTFAQECRAQNGYHY AQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIGDSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITS LIFPHLLKDYDWIIEYQAEQTAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS HLNSIPGCTE
Sequences:
>Translated_490_residues MSRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGISEEMLATYYGRDLLTQNQIAE IQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAELRKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGT PLEIWGNHDDYRENNVIIARQRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQYGTRETGTFAQECRAQNGYHY AQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIGDSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITS LIFPHLLKDYDWIIEYQAEQTAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS HLNSIPGCTE >Mature_489_residues SRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGISEEMLATYYGRDLLTQNQIAEI QNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAELRKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGTP LEIWGNHDDYRENNVIIARQRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRKK TPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQYGTRETGTFAQECRAQNGYHYA QDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIGDSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITSL IFPHLLKDYDWIIEYQAEQTAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVSH LNSIPGCTE
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: COG1541
COG function: function code H; Coenzyme F390 synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56683; Mature: 56552
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGIS CCEEEEECCCCCCCCCCEEEEECCCCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCH EEMLATYYGRDLLTQNQIAEIQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAEL HHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHH RKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGTPLEIWGNHDDYRENNVIIAR HHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEEEE QRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK CCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQY CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEE GTRETGTFAQECRAQNGYHYAQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIG CCCCCCHHHHHHHHCCCCEEHHHEEEEEEECCCCCCCCCCCEEEEEHHHHHEEHHEEECC DSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITSLIFPHLLKDYDWIIEYQAEQ CCHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC TAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCEEEEEE HLNSIPGCTE HHCCCCCCCC >Mature Secondary Structure SRIIHLNMPPRPYGMHAKLHWEQSTCKVKPAGAMYTNWLEKRLYQGVFYKINLFNKGIS CEEEEECCCCCCCCCCEEEEECCCCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCH EEMLATYYGRDLLTQNQIAEIQNEKLREFLKYCNDNSPYYHKQIQEHSVNLRAEDMFAEL HHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHH RKIPSISKMEITRNLESIFSREYVGRKGLIAKFTGGSTGTPLEIWGNHDDYRENNVIIAR HHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEEEE QRRWVNWVGGMKTMTLFGGSVDLPSSLRRITKRVLINDTILNIMDRSNTDFSSIVAVIRK CCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC KTPHALIAYFSILKELSQVCECEKRPLSGINVAIACAEPIEERARRHAEQWLNAPIYFQY CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEEE GTRETGTFAQECRAQNGYHYAQDIIFCEVLDDDDNPCEFGNLVITWFANKVVPLVRYKIG CCCCCCHHHHHHHHCCCCEEHHHEEEEEEECCCCCCCCCCCEEEEEHHHHHEEHHEEECC DSASIVTEACACGLPYHRIDRIEGRMASMIITPDNRRITSLIFPHLLKDYDWIIEYQAEQ CCHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC TAKDHIVIRIRTNRKSSISDALEDIKKKFNELLGRDICLEFKINEDFLKVPTGKHLYFVS CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCEEEEEE HLNSIPGCTE HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]