Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

Click here to switch to the map view.

The map label for this gene is 85858219

Identifier: 85858219

GI number: 85858219

Start: 373521

End: 374480

Strand: Direct

Name: 85858219

Synonym: SYN_01153

Alternate gene names: NA

Gene position: 373521-374480 (Clockwise)

Preceding gene: 85858217

Following gene: 85858220

Centisome position: 11.75

GC content: 56.25

Gene sequence:

>960_bases
ATGAATGCTGATATCTTTGCGGAATGGCTGCGTCGTCAGGGATATAAAGTAGCTCGAACCCCTTCCAGCTACTGGTACGA
AGCAAATGCGAAAGTCTATCAGGCCTTCCCCTATCACTGGGTCATTCAACCGAGTGAGGAGGAGCTGTCAGCCCTTCTGC
GGCAAAATCAGGCCATCGCCCTGCGCTATTCCGCGCCGATTGACAACCCCTTGGGCTGCGTCAGCTATCATGCCGTAATC
GACGAGCCCGGCTATGCCCTGGAAAAGCTGGATCGAAGATCGCGGCAGAATATCCGCACGGGGCTGAAGAACTGTACCGT
GGAGAATATTTCCCTGGAGCGTCTGGCGGAGGAAGGCTGGGAACTGGAGTCGGATACGGCCGACCGTCAGCAGAGGGAAA
TCGCCTCGAGCCAGGAAACCTGGCGCCGGCGGTATCTGTCCGCTGCGGACCTTCCCGGTTTCGAGGCGTGGGGAGCCTTG
GTAAACGGCCGCCTGGTCGCGTCGCTTCTCGGCTTTCAATGCGGGGATTGCTTCGAACTCATCTCTCAGCAATGCCACCG
GGACTTCCTGAACATCCGCGTCAATAACGCCGTGAGTTTCATTGCCACTCAGAACGTCAATAATCGGCCGGAAATTAAAT
CCATTTTCTATACGCTGCAGTCTCTCGACGCGCCGCCCAGTGTCGACGAATTCAAATTCCGGATGGGATATAGCGCCAAA
CCGCTGCGGCAGAGAGTGGTTTTCCATCCCTGGATACCCACTGAGGCAAATGGATTGACCCACGCCATTCTTGTGAAACT
CCTGAAAAGAGATCCCAGCAGTCGCCTTTTAGCCAAGGCGGAAGGAATGCTCCGATTCTACCGCCAGGGTCTGCTGCCCC
TCGCAGAGCAGGAATGGCCCGGCTGTCTGGCTGAGGCCAGAGAAAAAATCCTTCATCGTTCCTATGCGGACCAGGTCTGA

Upstream 100 bases:

>100_bases
AGGAGAACCTCCCCTTCCAAATTTCGAAACAGAGAGGAGGTTTAAAATGATTATCAGACGGGATTCCGAACTCATGTAAT
TCAGAAAGCGGAGCTGTGCC

Downstream 100 bases:

>100_bases
AAAAAGGTCGTAATTCAATCTGACAGTCGACTCCTTCGCCCTGAAAAAAACATCATGAAAGAATCAAGTAATTGCCAGAT
ACCCTGCCTGCCTGAAATGG

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNADIFAEWLRRQGYKVARTPSSYWYEANAKVYQAFPYHWVIQPSEEELSALLRQNQAIALRYSAPIDNPLGCVSYHAVI
DEPGYALEKLDRRSRQNIRTGLKNCTVENISLERLAEEGWELESDTADRQQREIASSQETWRRRYLSAADLPGFEAWGAL
VNGRLVASLLGFQCGDCFELISQQCHRDFLNIRVNNAVSFIATQNVNNRPEIKSIFYTLQSLDAPPSVDEFKFRMGYSAK
PLRQRVVFHPWIPTEANGLTHAILVKLLKRDPSSRLLAKAEGMLRFYRQGLLPLAEQEWPGCLAEAREKILHRSYADQV

Sequences:

>Translated_319_residues
MNADIFAEWLRRQGYKVARTPSSYWYEANAKVYQAFPYHWVIQPSEEELSALLRQNQAIALRYSAPIDNPLGCVSYHAVI
DEPGYALEKLDRRSRQNIRTGLKNCTVENISLERLAEEGWELESDTADRQQREIASSQETWRRRYLSAADLPGFEAWGAL
VNGRLVASLLGFQCGDCFELISQQCHRDFLNIRVNNAVSFIATQNVNNRPEIKSIFYTLQSLDAPPSVDEFKFRMGYSAK
PLRQRVVFHPWIPTEANGLTHAILVKLLKRDPSSRLLAKAEGMLRFYRQGLLPLAEQEWPGCLAEAREKILHRSYADQV
>Mature_319_residues
MNADIFAEWLRRQGYKVARTPSSYWYEANAKVYQAFPYHWVIQPSEEELSALLRQNQAIALRYSAPIDNPLGCVSYHAVI
DEPGYALEKLDRRSRQNIRTGLKNCTVENISLERLAEEGWELESDTADRQQREIASSQETWRRRYLSAADLPGFEAWGAL
VNGRLVASLLGFQCGDCFELISQQCHRDFLNIRVNNAVSFIATQNVNNRPEIKSIFYTLQSLDAPPSVDEFKFRMGYSAK
PLRQRVVFHPWIPTEANGLTHAILVKLLKRDPSSRLLAKAEGMLRFYRQGLLPLAEQEWPGCLAEAREKILHRSYADQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36623; Mature: 36623

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADIFAEWLRRQGYKVARTPSSYWYEANAKVYQAFPYHWVIQPSEEELSALLRQNQAIA
CCHHHHHHHHHHCCCEEEECCCCCEEECCCEEEEECCEEEEECCCHHHHHHHHHCCCEEE
LRYSAPIDNPLGCVSYHAVIDEPGYALEKLDRRSRQNIRTGLKNCTVENISLERLAEEGW
EEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
ELESDTADRQQREIASSQETWRRRYLSAADLPGFEAWGALVNGRLVASLLGFQCGDCFEL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
ISQQCHRDFLNIRVNNAVSFIATQNVNNRPEIKSIFYTLQSLDAPPSVDEFKFRMGYSAK
HHHHHHHHHHHEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCC
PLRQRVVFHPWIPTEANGLTHAILVKLLKRDPSSRLLAKAEGMLRFYRQGLLPLAEQEWP
HHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GCLAEAREKILHRSYADQV
CHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNADIFAEWLRRQGYKVARTPSSYWYEANAKVYQAFPYHWVIQPSEEELSALLRQNQAIA
CCHHHHHHHHHHCCCEEEECCCCCEEECCCEEEEECCEEEEECCCHHHHHHHHHCCCEEE
LRYSAPIDNPLGCVSYHAVIDEPGYALEKLDRRSRQNIRTGLKNCTVENISLERLAEEGW
EEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
ELESDTADRQQREIASSQETWRRRYLSAADLPGFEAWGALVNGRLVASLLGFQCGDCFEL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
ISQQCHRDFLNIRVNNAVSFIATQNVNNRPEIKSIFYTLQSLDAPPSVDEFKFRMGYSAK
HHHHHHHHHHHEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCC
PLRQRVVFHPWIPTEANGLTHAILVKLLKRDPSSRLLAKAEGMLRFYRQGLLPLAEQEWP
HHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GCLAEAREKILHRSYADQV
CHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA