Click here to switch to the map view.

The map label for this gene is dedA [H]

Identifier: 85858198

GI number: 85858198

Start: 349502

End: 350212

Strand: Direct

Name: dedA [H]

Synonym: SYN_00515

Alternate gene names: 85858198

Gene position: 349502-350212 (Clockwise)

Preceding gene: 85858197

Following gene: 85858199

Centisome position: 10.99

GC content: 47.68

Gene sequence:

>711_bases
TTGACTTTCAATGAGCCGTTCCCTATACTCCCGCCCCAAATAAGATCAAAATGGAAACTTTACATGGAAATCGCAGTTAA
TTTCATTGATTTTTTTATTCATCTCGACAGGTATCTTCAGCTCCTGATTTCAAATTTCGGCATATGGACCTACGTCATCA
TTTTTCTGATTATTTTCTGTGAAACGGGGCTTGTCGTGACGCCCTTTCTGCCGGGAGATTCTCTCCTTTTCGGGTTGGGA
GCCCTGGCCGCCACCGGCGCCCTGGAAGTGGAATTGCTGCTGATGGCCATTCCTGTTGCGGCGGTGGCCGGAGATAATGT
GAACTATACCCTGGGTAAATTTATCGGACCTCGAGTCTTTCATCAGGAAAAATCCCGTTTTTTCAAGAAGGAATATCTCG
ATCGAACCCACCGGTTTTACGAACGGTATGGGGGAAAAACCATCATTATCGCGCGATTTGTTCCCATTGTGCGTACATTT
TCCCCTTTTGTGGCCGGGATAGGCCAAATGGCCTATCCCCGGTTTCTTGCCTACAGCGTATCGGGGGGGCTTGCCTGGGT
AGCCTTTTTTATCCTGGGCGGCTTTTACTTTGGGAATCTTCCTTTAATTAAAGAAAATTTCACCCTGGTTATCCTGGCGA
TCATCGGAATATCTATCATGCCCGGTCTGTTCGAATTTGTCCGTCGCCGCAGGGAGATGACAGCCGGTTAA

Upstream 100 bases:

>100_bases
GGCCTGCATTGCCGGGAAACTTTTTCAGTAAGGAAGCCGGAAAAGATCACGCGCATTCCTCAGGCGGCAGCCGGAGGAAT
GCGTCGTTTCAAGGGAGTTC

Downstream 100 bases:

>100_bases
AAAAAATTCTACACCGGCCTATTCGTGAGAATGAGGCAATAATCTGCTTATGAGAATTTCACCGTCTGGGAGAAGGAAAA
AGTGAAGCGCATCGTCATCT

Product: dedA family protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTFNEPFPILPPQIRSKWKLYMEIAVNFIDFFIHLDRYLQLLISNFGIWTYVIIFLIIFCETGLVVTPFLPGDSLLFGLG
ALAATGALEVELLLMAIPVAAVAGDNVNYTLGKFIGPRVFHQEKSRFFKKEYLDRTHRFYERYGGKTIIIARFVPIVRTF
SPFVAGIGQMAYPRFLAYSVSGGLAWVAFFILGGFYFGNLPLIKENFTLVILAIIGISIMPGLFEFVRRRREMTAG

Sequences:

>Translated_236_residues
MTFNEPFPILPPQIRSKWKLYMEIAVNFIDFFIHLDRYLQLLISNFGIWTYVIIFLIIFCETGLVVTPFLPGDSLLFGLG
ALAATGALEVELLLMAIPVAAVAGDNVNYTLGKFIGPRVFHQEKSRFFKKEYLDRTHRFYERYGGKTIIIARFVPIVRTF
SPFVAGIGQMAYPRFLAYSVSGGLAWVAFFILGGFYFGNLPLIKENFTLVILAIIGISIMPGLFEFVRRRREMTAG
>Mature_235_residues
TFNEPFPILPPQIRSKWKLYMEIAVNFIDFFIHLDRYLQLLISNFGIWTYVIIFLIIFCETGLVVTPFLPGDSLLFGLGA
LAATGALEVELLLMAIPVAAVAGDNVNYTLGKFIGPRVFHQEKSRFFKKEYLDRTHRFYERYGGKTIIIARFVPIVRTFS
PFVAGIGQMAYPRFLAYSVSGGLAWVAFFILGGFYFGNLPLIKENFTLVILAIIGISIMPGLFEFVRRRREMTAG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=210, Percent_Identity=52.3809523809524, Blast_Score=243, Evalue=1e-65,
Organism=Escherichia coli, GI1789481, Length=151, Percent_Identity=33.7748344370861, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789384, Length=156, Percent_Identity=30.1282051282051, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786252, Length=165, Percent_Identity=28.4848484848485, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 26804; Mature: 26673

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFNEPFPILPPQIRSKWKLYMEIAVNFIDFFIHLDRYLQLLISNFGIWTYVIIFLIIFC
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ETGLVVTPFLPGDSLLFGLGALAATGALEVELLLMAIPVAAVAGDNVNYTLGKFIGPRVF
CCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHH
HQEKSRFFKKEYLDRTHRFYERYGGKTIIIARFVPIVRTFSPFVAGIGQMAYPRFLAYSV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGGLAWVAFFILGGFYFGNLPLIKENFTLVILAIIGISIMPGLFEFVRRRREMTAG
CCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TFNEPFPILPPQIRSKWKLYMEIAVNFIDFFIHLDRYLQLLISNFGIWTYVIIFLIIFC
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ETGLVVTPFLPGDSLLFGLGALAATGALEVELLLMAIPVAAVAGDNVNYTLGKFIGPRVF
CCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHH
HQEKSRFFKKEYLDRTHRFYERYGGKTIIIARFVPIVRTFSPFVAGIGQMAYPRFLAYSV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGGLAWVAFFILGGFYFGNLPLIKENFTLVILAIIGISIMPGLFEFVRRRREMTAG
CCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]