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The map label for this gene is csd [H]

Identifier: 85375669

GI number: 85375669

Start: 2853462

End: 2854601

Strand: Direct

Name: csd [H]

Synonym: ELI_14210

Alternate gene names: 85375669

Gene position: 2853462-2854601 (Clockwise)

Preceding gene: 85375668

Following gene: 85375676

Centisome position: 93.48

GC content: 65.35

Gene sequence:

>1140_bases
ATGTCGCACATCCCGAACCAGCGGCACCGTTTCGCGATTCCCGAGGAAGTGCATTACCTCAACAACGCCTACATGGCGCC
GCTCTCCTTCGAGGTCACGGCGGCCATGGAGGAAGCGGCGCGGCTCAAACAGGCGCCGTGGAATTTCCGCCCCGCCGACT
TTTTCAGCGTGTGCGAAAACTTCCGCGAGCGCGCGGCGCGGCTGGCCGGGGTGTCCGCCGACACTATCGCGATCGTCCCT
TCGGTCAGCTACGCACTGGCGATTGCAGCGAAGAATCTGCCCTTCGCAAAAGGGCAGCAGATCGTCACTCTGGCCGACCA
GTTTCCCTCCAACGTCTACGTCTGGCGCGAACTGGCCGCGCGTGAGGGAGGACAGGTTGTCGCGGCCCGGCGCGATGAAG
AGGCCTGCTGGACCGCCGCCGTTCTCGACGCGATCGGTCCGGACACCGCGATCGTCGCCGTGCCGCATTGCCACTGGGCC
GACGGGCGGCTGGTCGATCTCGAACGGGTCGGCGCGAAATGTCGTGAACACGGTGCGGCGCTGGTGCTGGATTTGACCCA
ATCGCTCGGCGCGATGCCGGTTGACTTCGCCAAGGTGCAGCCCGATTTCGCGGTCGCCGCCTGCTACAAATGGCTGATGG
GGCCCTATGGCATCGGCATGCTCTACGTCGCAGAATGGCATCACAACGGCACTCCCTTGGAGTACAATTGGATCAACCGT
GGCGGCTCGGAAGATTTTACGCGGCTGGTCGACTACCGGGACGATTCCCAGCCCGGCGCGCGCCGTTTCGATATGGGCGA
GAAATCCAATCCGCCGCTGCTGGCAGGGGCCGGTGCGGGAATCGATTTCCTGCTGGAATTCGGCATTGAGGCGATCGCGG
AGGCACTCGCTGCCCGAACCGGAGCGATCGAGCGCGAAGCGAAAGCGCTGGGATTGACGGCGGCGACGCAGGGGACCCGG
GCACCGCACTTCCTGTCGCTGGGATTTCCCGACGGGCTGCCCGACGGTCTGACGGATCGCCTGGCGGAACGGCAGGTCCA
TGTCTCGGCGCGGGGCGCATCGCTCAGGGTGACGCCGCATCTCTATACCAGCGACGCCGACTGCGCGGCGCTGCTCGAGA
CTCTTGCGGTCTGCTGCTAG

Upstream 100 bases:

>100_bases
GAAAAACCGGTCCAGATCGCCCCGATGACCGCGATTGCGCCCGATGTCCTGACGCTGGCGGTGCTCGCGGCGGCCGGGGT
GGTGGGCTGAGCGGCAACCC

Downstream 100 bases:

>100_bases
GCGGTGTCTTCCAGCACCTCGCCGTCGAGCAGGCCGATCATGTCGTCCTGCCCGTCCTGCGCATTTTCGTAACAGGTCTG
GAGGTCTTCGGCTTCATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSHIPNQRHRFAIPEEVHYLNNAYMAPLSFEVTAAMEEAARLKQAPWNFRPADFFSVCENFRERAARLAGVSADTIAIVP
SVSYALAIAAKNLPFAKGQQIVTLADQFPSNVYVWRELAAREGGQVVAARRDEEACWTAAVLDAIGPDTAIVAVPHCHWA
DGRLVDLERVGAKCREHGAALVLDLTQSLGAMPVDFAKVQPDFAVAACYKWLMGPYGIGMLYVAEWHHNGTPLEYNWINR
GGSEDFTRLVDYRDDSQPGARRFDMGEKSNPPLLAGAGAGIDFLLEFGIEAIAEALAARTGAIEREAKALGLTAATQGTR
APHFLSLGFPDGLPDGLTDRLAERQVHVSARGASLRVTPHLYTSDADCAALLETLAVCC

Sequences:

>Translated_379_residues
MSHIPNQRHRFAIPEEVHYLNNAYMAPLSFEVTAAMEEAARLKQAPWNFRPADFFSVCENFRERAARLAGVSADTIAIVP
SVSYALAIAAKNLPFAKGQQIVTLADQFPSNVYVWRELAAREGGQVVAARRDEEACWTAAVLDAIGPDTAIVAVPHCHWA
DGRLVDLERVGAKCREHGAALVLDLTQSLGAMPVDFAKVQPDFAVAACYKWLMGPYGIGMLYVAEWHHNGTPLEYNWINR
GGSEDFTRLVDYRDDSQPGARRFDMGEKSNPPLLAGAGAGIDFLLEFGIEAIAEALAARTGAIEREAKALGLTAATQGTR
APHFLSLGFPDGLPDGLTDRLAERQVHVSARGASLRVTPHLYTSDADCAALLETLAVCC
>Mature_378_residues
SHIPNQRHRFAIPEEVHYLNNAYMAPLSFEVTAAMEEAARLKQAPWNFRPADFFSVCENFRERAARLAGVSADTIAIVPS
VSYALAIAAKNLPFAKGQQIVTLADQFPSNVYVWRELAAREGGQVVAARRDEEACWTAAVLDAIGPDTAIVAVPHCHWAD
GRLVDLERVGAKCREHGAALVLDLTQSLGAMPVDFAKVQPDFAVAACYKWLMGPYGIGMLYVAEWHHNGTPLEYNWINRG
GSEDFTRLVDYRDDSQPGARRFDMGEKSNPPLLAGAGAGIDFLLEFGIEAIAEALAARTGAIEREAKALGLTAATQGTRA
PHFLSLGFPDGLPDGLTDRLAERQVHVSARGASLRVTPHLYTSDADCAALLETLAVCC

Specific function: Fe-S cluster biosynthesis [C]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 41145; Mature: 41014

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHIPNQRHRFAIPEEVHYLNNAYMAPLSFEVTAAMEEAARLKQAPWNFRPADFFSVCEN
CCCCCCCCCCCCCHHHHHHHCCCEECCCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FRERAARLAGVSADTIAIVPSVSYALAIAAKNLPFAKGQQIVTLADQFPSNVYVWRELAA
HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCHHHHHHHHH
REGGQVVAARRDEEACWTAAVLDAIGPDTAIVAVPHCHWADGRLVDLERVGAKCREHGAA
CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHCCCE
LVLDLTQSLGAMPVDFAKVQPDFAVAACYKWLMGPYGIGMLYVAEWHHNGTPLEYNWINR
EEEEEHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCCC
GGSEDFTRLVDYRDDSQPGARRFDMGEKSNPPLLAGAGAGIDFLLEFGIEAIAEALAART
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
GAIEREAKALGLTAATQGTRAPHFLSLGFPDGLPDGLTDRLAERQVHVSARGASLRVTPH
CCHHHHHHHHCEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHEEEEEECCCEEEECCE
LYTSDADCAALLETLAVCC
EECCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SHIPNQRHRFAIPEEVHYLNNAYMAPLSFEVTAAMEEAARLKQAPWNFRPADFFSVCEN
CCCCCCCCCCCCHHHHHHHCCCEECCCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FRERAARLAGVSADTIAIVPSVSYALAIAAKNLPFAKGQQIVTLADQFPSNVYVWRELAA
HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCHHHHHHHHH
REGGQVVAARRDEEACWTAAVLDAIGPDTAIVAVPHCHWADGRLVDLERVGAKCREHGAA
CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHCCCE
LVLDLTQSLGAMPVDFAKVQPDFAVAACYKWLMGPYGIGMLYVAEWHHNGTPLEYNWINR
EEEEEHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCCC
GGSEDFTRLVDYRDDSQPGARRFDMGEKSNPPLLAGAGAGIDFLLEFGIEAIAEALAART
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
GAIEREAKALGLTAATQGTRAPHFLSLGFPDGLPDGLTDRLAERQVHVSARGASLRVTPH
CCHHHHHHHHCEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHEEEEEECCCEEEECCE
LYTSDADCAALLETLAVCC
EECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]