BacMap

Definition	Erythrobacter litoralis HTCC2594 chromosome, complete genome.
Accession	NC_007722
Length	3,052,398

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The map label for this gene is ygfF [C]

Identifier: 85375589

GI number: 85375589

Start: 2781932

End: 2782690

Strand: Direct

Name: ygfF [C]

Synonym: ELI_13810

Alternate gene names: 85375589

Gene position: 2781932-2782690 (Clockwise)

Preceding gene: 85375588

Following gene: 162007983

Centisome position: 91.14

GC content: 66.8

Gene sequence:

>759_bases
ATGGGTAAGCGAACGATCTGCATCACCGGAGCGGGCAACGGTATCGGCCGCGGCATCGCGGGATTTTTCAGCGACAAGGG
CTGGCGCGTGATCGCGCTCGACCGCGACGGGGAAGCGCTGGCAGAGATTGCGGGCGGGCAAATCCATACCCTCACCTGCG
ATGTGGGCGATGAAGCGGCGGTTGCTGCGGCCTTCGAAGAAGTGCGCGACCTGCTGGATGGCGGTGCGCTCGACGCGCTG
GTCAACAACGCCGCCATCGCCGATCCCTATTGCGGCCCGCTCGAAGACTTGTCGCTCGACGACTGGCACGGCTGGATCGA
TGCCAGCCTGACCGCGACCTTTCTCGTCAGCCGCGCCGCGCTGCCTTTTCTCCGGCGGAGCGAAGTGGGTGCGGCGATCG
TCAATATATCGTCCACGCGCGCGTTGCAGTCCGAGCCGGAGACATTCGCCTATGCCGCGGCCAAGGGCGGCGTCAGCGCG
CTGACCCATGCCATGGCCGTCTCGCTCGGCCCTGAAATTCGGGTCAACGCCGTGCTGCCCGGCTGGATCGAGACCGGCCC
GTGGCAGAAGCGCAGCGAGCGTTCGGAGCCCGACCACCGCGACATCGACCGCCGGCAGCACCCGGTCGGCCGGGTCGGGC
GGGTGGAGGATATCGCCCATGCGGTCGACTGGCTGGTGTCGGACCGGTCCGGCTTCGTGACCGGGCAGCAAATCGTCGTC
GATGGCGGTATGAGCGTGAAGATGATCTATGCCGAGTGA

Upstream 100 bases:

>100_bases
CGATCCGGCGCGGCTGGAGGATGTGCTGGAGGCGATGGGCTGACAGGCCTGCCGCAGCTATCTCCGGAGAACCATCGCCC
GCATTGCCCGTTGTCGGGAT

Downstream 100 bases:

>100_bases
CCGTCGGACGTCGCGATCCGCGGACTAGCTTTCCCACAGGCGGACCGGTGACTACCTTCGCGATCCGCGCGGCAACCCGT
ACAAACGCTCGAGCCTTCGT

Product: short-chain dehydrogenase/reductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MGKRTICITGAGNGIGRGIAGFFSDKGWRVIALDRDGEALAEIAGGQIHTLTCDVGDEAAVAAAFEEVRDLLDGGALDAL
VNNAAIADPYCGPLEDLSLDDWHGWIDASLTATFLVSRAALPFLRRSEVGAAIVNISSTRALQSEPETFAYAAAKGGVSA
LTHAMAVSLGPEIRVNAVLPGWIETGPWQKRSERSEPDHRDIDRRQHPVGRVGRVEDIAHAVDWLVSDRSGFVTGQQIVV
DGGMSVKMIYAE

Sequences:

>Translated_252_residues
MGKRTICITGAGNGIGRGIAGFFSDKGWRVIALDRDGEALAEIAGGQIHTLTCDVGDEAAVAAAFEEVRDLLDGGALDAL
VNNAAIADPYCGPLEDLSLDDWHGWIDASLTATFLVSRAALPFLRRSEVGAAIVNISSTRALQSEPETFAYAAAKGGVSA
LTHAMAVSLGPEIRVNAVLPGWIETGPWQKRSERSEPDHRDIDRRQHPVGRVGRVEDIAHAVDWLVSDRSGFVTGQQIVV
DGGMSVKMIYAE
>Mature_251_residues
GKRTICITGAGNGIGRGIAGFFSDKGWRVIALDRDGEALAEIAGGQIHTLTCDVGDEAAVAAAFEEVRDLLDGGALDALV
NNAAIADPYCGPLEDLSLDDWHGWIDASLTATFLVSRAALPFLRRSEVGAAIVNISSTRALQSEPETFAYAAAKGGVSAL
THAMAVSLGPEIRVNAVLPGWIETGPWQKRSERSEPDHRDIDRRQHPVGRVGRVEDIAHAVDWLVSDRSGFVTGQQIVVD
GGMSVKMIYAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=33.8709677419355, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=31.7073170731707, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=33.1877729257642, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=32.9365079365079, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI32483357, Length=263, Percent_Identity=28.8973384030418, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI10190704, Length=244, Percent_Identity=32.3770491803279, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4503301, Length=215, Percent_Identity=28.8372093023256, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=30.1204819277108, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=27.6679841897233, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=30.4123711340206, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI40254986, Length=197, Percent_Identity=31.9796954314721, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=34.0080971659919, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=33.2046332046332, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=32.5102880658436, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.4285714285714, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=31.4741035856574, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=27.8225806451613, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=29.6, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=28.740157480315, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=30.8641975308642, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=27.710843373494, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787526, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=30.7407407407407, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=32.421875, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=29.1828793774319, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=30.6451612903226, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=259, Percent_Identity=33.976833976834, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=30.1204819277108, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=30.7407407407407, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=29.9242424242424, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=29.1666666666667, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=30.8, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=245, Percent_Identity=30.2040816326531, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=28.6274509803922, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=29.277566539924, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=29.2307692307692, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=27.6752767527675, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=28.0898876404494, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=29.1044776119403, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=28.8973384030418, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=29.7794117647059, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=27.037037037037, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=217, Percent_Identity=29.9539170506912, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=28.3524904214559, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=28.4644194756554, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17559964, Length=208, Percent_Identity=28.8461538461538, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=28.5171102661597, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=27.5471698113208, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=25.8555133079848, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=26.2745098039216, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI72001658, Length=208, Percent_Identity=28.3653846153846, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=228, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=33.6, Blast_Score=111, Evalue=4e-25,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=30.952380952381, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=28.8, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=31.2, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=31.2, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=29.4820717131474, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=33.0612244897959, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=26.6331658291457, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641232, Length=200, Percent_Identity=28, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21357673, Length=220, Percent_Identity=33.1818181818182, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26804; Mature: 26673

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKRTICITGAGNGIGRGIAGFFSDKGWRVIALDRDGEALAEIAGGQIHTLTCDVGDEAA
CCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHCCCEEEEEEECCCCHHH
VAAAFEEVRDLLDGGALDALVNNAAIADPYCGPLEDLSLDDWHGWIDASLTATFLVSRAA
HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LPFLRRSEVGAAIVNISSTRALQSEPETFAYAAAKGGVSALTHAMAVSLGPEIRVNAVLP
HHHHHHHCCCEEEEECCCHHHHCCCCCCEEEHHHCCCHHHHHHHHHHHCCCCEEEEEEEC
GWIETGPWQKRSERSEPDHRDIDRRQHPVGRVGRVEDIAHAVDWLVSDRSGFVTGQQIVV
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCEEEE
DGGMSVKMIYAE
ECCCEEEEEEEC
>Mature Secondary Structure 
GKRTICITGAGNGIGRGIAGFFSDKGWRVIALDRDGEALAEIAGGQIHTLTCDVGDEAA
CCEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHCCCEEEEEEECCCCHHH
VAAAFEEVRDLLDGGALDALVNNAAIADPYCGPLEDLSLDDWHGWIDASLTATFLVSRAA
HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LPFLRRSEVGAAIVNISSTRALQSEPETFAYAAAKGGVSALTHAMAVSLGPEIRVNAVLP
HHHHHHHCCCEEEEECCCHHHHCCCCCCEEEHHHCCCHHHHHHHHHHHCCCCEEEEEEEC
GWIETGPWQKRSERSEPDHRDIDRRQHPVGRVGRVEDIAHAVDWLVSDRSGFVTGQQIVV
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCEEEE
DGGMSVKMIYAE
ECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934833; 10984043 [H]