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The map label for this gene is ybbN [H]

Identifier: 85375129

GI number: 85375129

Start: 2327823

End: 2328740

Strand: Direct

Name: ybbN [H]

Synonym: ELI_11510

Alternate gene names: 85375129

Gene position: 2327823-2328740 (Clockwise)

Preceding gene: 85375127

Following gene: 85375130

Centisome position: 76.26

GC content: 61.11

Gene sequence:

>918_bases
ATGGGTCTCAATATCGACGAACAGAAAGCCGTCGACAAATTCCGCCAGCAGGTCGTCGAACCTTCGATGACGAAGCTGGT
GGTGCTCGATTTCTGGGCCGAATGGTGCGGGCCTTGCAAGCAATTGACCCCCGTTCTCGAAAAGGTCGTCGGCGAGTATG
CCGACAAGGGCGTGGTGCTGGAAAAGGTCAATGTCGACGAAGAGCAGTTCATCGCCAGCCAGTTCCAGGTTCGCTCTATC
CCCACGGTCTATGCGATGTTCCAGGGCCAGCCGGTGGCCGACATGACCAGCGCGCGGACCGAGTCGCAAGTGAAGCAGAT
GCTCGACCAATTGCTCGAGAAACTGCCGATCAACGCTGATGGTGGTCCTGATGGTGCCCCCCAAGGTCCTTCCGAGGAAG
AGATCAAGCAGTTCATCGCGATGGGCGAGCAGGCGCTGAGCGATGGCGATGCAGAGCGGGCTGTCGGCATCTTCCAGCAA
GTGATCGAATTCGCGCCGACCAGTATCGAGGCGATGTCGGGCTATCTGCGCGCGCTGATCGAAGCAGGCCATGCCGAGCA
GGCTGAGGCGATGCTGAAGGAAATGCCCGAAGACGTCGCCAAGGATCCGGCTATCGAGCGCGTCAAAGCGGCGCTGGAGC
TGTCCGCCAACAAGGTCGATGACAGCGAACTGGCCGCACTCAAGGACAAAGCTGCAGGCGGCGACATGGACGCGCGCTAT
GCCTATGCCGAAGCGGCGTTCGCCGCCGGCCAGCGCGACGCGGCTGCCGACGAACTGCTGGCGATGATCGAGGCCGATCG
CGAGTGGAACGATGGGGCCGCGCGCACGAAGCTGCTGCAAATTTTCGAAGCGGTCGGGCTGGAGGACGAGTGGGTCGTCG
CCACCCGGCGGAAGTTGTCGAAAATTCTTTTCGGATGA

Upstream 100 bases:

>100_bases
GCCTTCGCATCGGCCCTTCAAAAATGGTCCTGAAAGCCCACATTGCACCTGCTACACCGCGCAGAGCGAATCCGGATGAA
GGGGAAGTTTCTTGGCCAGC

Downstream 100 bases:

>100_bases
GGTTGCTCCGGCACTCAAGGTCCGTTCGGGCTGAGCCTGTCGAAGCCCAGCCGCAACGCTTTGCCTGCCCTTCGACAGGC
TCAGGGCGAACGGGCGTGGG

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MGLNIDEQKAVDKFRQQVVEPSMTKLVVLDFWAEWCGPCKQLTPVLEKVVGEYADKGVVLEKVNVDEEQFIASQFQVRSI
PTVYAMFQGQPVADMTSARTESQVKQMLDQLLEKLPINADGGPDGAPQGPSEEEIKQFIAMGEQALSDGDAERAVGIFQQ
VIEFAPTSIEAMSGYLRALIEAGHAEQAEAMLKEMPEDVAKDPAIERVKAALELSANKVDDSELAALKDKAAGGDMDARY
AYAEAAFAAGQRDAAADELLAMIEADREWNDGAARTKLLQIFEAVGLEDEWVVATRRKLSKILFG

Sequences:

>Translated_305_residues
MGLNIDEQKAVDKFRQQVVEPSMTKLVVLDFWAEWCGPCKQLTPVLEKVVGEYADKGVVLEKVNVDEEQFIASQFQVRSI
PTVYAMFQGQPVADMTSARTESQVKQMLDQLLEKLPINADGGPDGAPQGPSEEEIKQFIAMGEQALSDGDAERAVGIFQQ
VIEFAPTSIEAMSGYLRALIEAGHAEQAEAMLKEMPEDVAKDPAIERVKAALELSANKVDDSELAALKDKAAGGDMDARY
AYAEAAFAAGQRDAAADELLAMIEADREWNDGAARTKLLQIFEAVGLEDEWVVATRRKLSKILFG
>Mature_304_residues
GLNIDEQKAVDKFRQQVVEPSMTKLVVLDFWAEWCGPCKQLTPVLEKVVGEYADKGVVLEKVNVDEEQFIASQFQVRSIP
TVYAMFQGQPVADMTSARTESQVKQMLDQLLEKLPINADGGPDGAPQGPSEEEIKQFIAMGEQALSDGDAERAVGIFQQV
IEFAPTSIEAMSGYLRALIEAGHAEQAEAMLKEMPEDVAKDPAIERVKAALELSANKVDDSELAALKDKAAGGDMDARYA
YAEAAFAAGQRDAAADELLAMIEADREWNDGAARTKLLQIFEAVGLEDEWVVATRRKLSKILFG

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=86, Percent_Identity=41.8604651162791, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87081747, Length=305, Percent_Identity=30.1639344262295, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082331, Length=83, Percent_Identity=37.3493975903614, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788936, Length=86, Percent_Identity=39.5348837209302, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646193, Length=112, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321648, Length=75, Percent_Identity=40, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24639826, Length=99, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17530795, Length=98, Percent_Identity=33.6734693877551, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17648013, Length=84, Percent_Identity=44.047619047619, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24583090, Length=84, Percent_Identity=44.047619047619, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 33357; Mature: 33226

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLNIDEQKAVDKFRQQVVEPSMTKLVVLDFWAEWCGPCKQLTPVLEKVVGEYADKGVVL
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEE
EKVNVDEEQFIASQFQVRSIPTVYAMFQGQPVADMTSARTESQVKQMLDQLLEKLPINAD
EECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GGPDGAPQGPSEEEIKQFIAMGEQALSDGDAERAVGIFQQVIEFAPTSIEAMSGYLRALI
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EAGHAEQAEAMLKEMPEDVAKDPAIERVKAALELSANKVDDSELAALKDKAAGGDMDARY
HCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH
AYAEAAFAAGQRDAAADELLAMIEADREWNDGAARTKLLQIFEAVGLEDEWVVATRRKLS
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
KILFG
HHHCC
>Mature Secondary Structure 
GLNIDEQKAVDKFRQQVVEPSMTKLVVLDFWAEWCGPCKQLTPVLEKVVGEYADKGVVL
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEE
EKVNVDEEQFIASQFQVRSIPTVYAMFQGQPVADMTSARTESQVKQMLDQLLEKLPINAD
EECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GGPDGAPQGPSEEEIKQFIAMGEQALSDGDAERAVGIFQQVIEFAPTSIEAMSGYLRALI
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EAGHAEQAEAMLKEMPEDVAKDPAIERVKAALELSANKVDDSELAALKDKAAGGDMDARY
HCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH
AYAEAAFAAGQRDAAADELLAMIEADREWNDGAARTKLLQIFEAVGLEDEWVVATRRKLS
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
KILFG
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]