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The map label for this gene is yifB [H]

Identifier: 85374958

GI number: 85374958

Start: 2158145

End: 2159152

Strand: Direct

Name: yifB [H]

Synonym: ELI_10655

Alternate gene names: 85374958

Gene position: 2158145-2159152 (Clockwise)

Preceding gene: 85374949

Following gene: 85374962

Centisome position: 70.7

GC content: 66.77

Gene sequence:

>1008_bases
GTGGTCGCTCTGGTTCGCACCGTGGCATATCTGGGTCTGGAAGCGCGCGCCGTGGAGGTGCAGTGCTCGATCGCGCCGGG
CCTGCCCAATTTCAACATCGTCGGGCTGGCGGACAAGGCCGTGGGCGAAAGCAAGGAGCGGGTGCGCGCGTCGCTCAGCT
CGATGGGCCTCGCGCTGCCGCCCAAGCGGATCACTATCAACCTGTCGCCTGCCGACCTGCCCAAGGAAGGCAGCCATTAC
GACCTGCCGATTGCACTGGCGCTGCTGGCGGCGATGGGCGTGACCGATGCCGAGCAGCTGGCGGACTTCATTGCAGTGGG
CGAGCTGGCGCTGGACGGCCGCGTGGTGCCGTCCCCCGGCGTGCTGCTGGCGGCGCTCCATGCGAGCGAGCAGGAATGCG
GGCTGATCTGCCCCGCCGCGCAGGGCAGCGAAGCCAAGTGGGCGAGCGAAGTGCCGGTGATCGCCGCACCCGACCTGCTG
GCGCTGCTCAATCACCTGAAGGGCACGGCGCGCCTGCCCGATCCGGTGCCGGGCGAGGTCGAAGCGCCCGATCACGGCCC
GGACCTCAAGCAGGTGAAGGGGCAGGAAACCGCCAAGCGCGCGCTCGAGATCGCCGCGGCGGGGGGACACAATCTGCTGA
TGAACGGTCCGCCGGGCGCGGGGAAATCGCTGCTTGCCTCATGCTTGCCAGGGATTCTCCCGCCGCTCTCTGCCAGCGAG
GCGCTGGAAGTGAGCATGGTGCAATCGGTCGCGGGCACGCTGGAGGGCGGGCGCATCAGCCGCCAGCGCCCGTTCCGCGC
GCCGCATCATTCGGCGAGCATGGCGGCGCTGACCGGCGGCGGTGTCAAAAGCCTCGGAAAACGGGATTCCGCGCCACATA
GAGCGAGATTCTCATTTCGTGTGACCGGCGGCAAGCTCAATAAGTTTCGTAAAGCAATAACTTACCGAGCTTGCGCGCTC
CGACCGACATTTTTTTGCCAACCAAGCATACCGCGAATTTTCGGATAG

Upstream 100 bases:

>100_bases
ACGCAATCGGCAATCAGGAAGGTTTCCATAAGGTTACTCGACATTCACCGTCCGAGCGGGCAGACAGATCGGCAGAGGAC
ACGCAAGATAGGGGAATTGC

Downstream 100 bases:

>100_bases
CCACAGTGGATGAGCGGGAAAGGAGAAATCTGCACAATTACTGGGTTGGCTGCCTGGTTCTGCCAGTGCTCGTTTATGCG
ATCGTGCGGCTACTAATTCA

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVALVRTVAYLGLEARAVEVQCSIAPGLPNFNIVGLADKAVGESKERVRASLSSMGLALPPKRITINLSPADLPKEGSHY
DLPIALALLAAMGVTDAEQLADFIAVGELALDGRVVPSPGVLLAALHASEQECGLICPAAQGSEAKWASEVPVIAAPDLL
ALLNHLKGTARLPDPVPGEVEAPDHGPDLKQVKGQETAKRALEIAAAGGHNLLMNGPPGAGKSLLASCLPGILPPLSASE
ALEVSMVQSVAGTLEGGRISRQRPFRAPHHSASMAALTGGGVKSLGKRDSAPHRARFSFRVTGGKLNKFRKAITYRACAL
RPTFFCQPSIPRIFG

Sequences:

>Translated_335_residues
MVALVRTVAYLGLEARAVEVQCSIAPGLPNFNIVGLADKAVGESKERVRASLSSMGLALPPKRITINLSPADLPKEGSHY
DLPIALALLAAMGVTDAEQLADFIAVGELALDGRVVPSPGVLLAALHASEQECGLICPAAQGSEAKWASEVPVIAAPDLL
ALLNHLKGTARLPDPVPGEVEAPDHGPDLKQVKGQETAKRALEIAAAGGHNLLMNGPPGAGKSLLASCLPGILPPLSASE
ALEVSMVQSVAGTLEGGRISRQRPFRAPHHSASMAALTGGGVKSLGKRDSAPHRARFSFRVTGGKLNKFRKAITYRACAL
RPTFFCQPSIPRIFG
>Mature_335_residues
MVALVRTVAYLGLEARAVEVQCSIAPGLPNFNIVGLADKAVGESKERVRASLSSMGLALPPKRITINLSPADLPKEGSHY
DLPIALALLAAMGVTDAEQLADFIAVGELALDGRVVPSPGVLLAALHASEQECGLICPAAQGSEAKWASEVPVIAAPDLL
ALLNHLKGTARLPDPVPGEVEAPDHGPDLKQVKGQETAKRALEIAAAGGHNLLMNGPPGAGKSLLASCLPGILPPLSASE
ALEVSMVQSVAGTLEGGRISRQRPFRAPHHSASMAALTGGGVKSLGKRDSAPHRARFSFRVTGGKLNKFRKAITYRACAL
RPTFFCQPSIPRIFG

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=280, Percent_Identity=43.9285714285714, Blast_Score=209, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 34856; Mature: 34856

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALVRTVAYLGLEARAVEVQCSIAPGLPNFNIVGLADKAVGESKERVRASLSSMGLALP
CHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCCC
PKRITINLSPADLPKEGSHYDLPIALALLAAMGVTDAEQLADFIAVGELALDGRVVPSPG
CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCEECCCCC
VLLAALHASEQECGLICPAAQGSEAKWASEVPVIAAPDLLALLNHLKGTARLPDPVPGEV
CEEEEECCCCCCCCEEECCCCCCCCCHHCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCC
EAPDHGPDLKQVKGQETAKRALEIAAAGGHNLLMNGPPGAGKSLLASCLPGILPPLSASE
CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCH
ALEVSMVQSVAGTLEGGRISRQRPFRAPHHSASMAALTGGGVKSLGKRDSAPHRARFSFR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCEEEEEE
VTGGKLNKFRKAITYRACALRPTFFCQPSIPRIFG
EECCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
>Mature Secondary Structure
MVALVRTVAYLGLEARAVEVQCSIAPGLPNFNIVGLADKAVGESKERVRASLSSMGLALP
CHHHHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCCC
PKRITINLSPADLPKEGSHYDLPIALALLAAMGVTDAEQLADFIAVGELALDGRVVPSPG
CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCEECCCCC
VLLAALHASEQECGLICPAAQGSEAKWASEVPVIAAPDLLALLNHLKGTARLPDPVPGEV
CEEEEECCCCCCCCEEECCCCCCCCCHHCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCC
EAPDHGPDLKQVKGQETAKRALEIAAAGGHNLLMNGPPGAGKSLLASCLPGILPPLSASE
CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCH
ALEVSMVQSVAGTLEGGRISRQRPFRAPHHSASMAALTGGGVKSLGKRDSAPHRARFSFR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCEEEEEE
VTGGKLNKFRKAITYRACALRPTFFCQPSIPRIFG
EECCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]