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The map label for this gene is cycM [H]

Identifier: 85374884

GI number: 85374884

Start: 2087840

End: 2088517

Strand: Reverse

Name: cycM [H]

Synonym: ELI_10285

Alternate gene names: 85374884

Gene position: 2088517-2087840 (Counterclockwise)

Preceding gene: 85374893

Following gene: 85374881

Centisome position: 68.42

GC content: 63.42

Gene sequence:

>678_bases
ATGGATAAGCAAAACACCATCTTCGGCTGGGTCCTCTTTTCGGGCATCGTCGGTCTCGGCCTAGCGATCGTCAGCGGCAA
GTACTTCCACGCAGACAACCTCGAAGCGCCGGAAAATCCCGGCTACTTCGTGGCGGGCGCGGCCGAAGGTGGCGGTGGCG
CCGAGGAAATGACCATGGCGGCTGCTCTGAACATGGATGGCGTCGACGTCTCGGCCGGTGAAGCCGTGTTTGCGAAGTGT
ACCGCGTGCCACACGATCGAGCAGGGCGGCGCCAACGGCATCGGCCCGAACCTCTACGGCATCATGGGCAAGGATATCGC
CAGCCTCGCTGGCTTCGCCTATTCCGATGCGCTTTCGGCCAAGGAAGGCGCCTGGACCTGGGACGAGATGAACGCCTGGC
TGAAGAGTCCGCGCGGTTATGCCAACGGCACCAAGATGAGCTTTGCCGGCCTGTCCAAGATCGAGGACCGCGCAGCGGTG
GCGCTCTACATGAACAGCATGGGCTCGAATATCCCTGTGCCCGAATACGTCGAAGCCGTTGCAGCCGAAGCCGAAGGCGC
GGAAGGCGGGGCGACCGATGGCGAAGCCGGTGTCGAAGGCGGTGCGATCGATCCGGTCGAAGCGGCCGAAGCCATGGATA
TGGCGCAGCCGGTGCCTGGAAATCCGCCGGGTACCTGA

Upstream 100 bases:

>100_bases
TTCCCACCTCTCCGGCCCGTTATGGCCTTGCCTTGACGCGGCTGGCTGACTAGAGCGCGCGGCAATCGGAACTTGAGCAC
ATTTCGCGGATTTTTATCGC

Downstream 100 bases:

>100_bases
TCGCTGCGGCGTCCTGAAGCGATTGTTTCAGCGCCCCTTGAACCCCTGAGCGACGACATACCATTCCGACGAGCCTTTGC
GGCTCGCCGGTGGCTTGGCA

Product: cytochrome C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MDKQNTIFGWVLFSGIVGLGLAIVSGKYFHADNLEAPENPGYFVAGAAEGGGGAEEMTMAAALNMDGVDVSAGEAVFAKC
TACHTIEQGGANGIGPNLYGIMGKDIASLAGFAYSDALSAKEGAWTWDEMNAWLKSPRGYANGTKMSFAGLSKIEDRAAV
ALYMNSMGSNIPVPEYVEAVAAEAEGAEGGATDGEAGVEGGAIDPVEAAEAMDMAQPVPGNPPGT

Sequences:

>Translated_225_residues
MDKQNTIFGWVLFSGIVGLGLAIVSGKYFHADNLEAPENPGYFVAGAAEGGGGAEEMTMAAALNMDGVDVSAGEAVFAKC
TACHTIEQGGANGIGPNLYGIMGKDIASLAGFAYSDALSAKEGAWTWDEMNAWLKSPRGYANGTKMSFAGLSKIEDRAAV
ALYMNSMGSNIPVPEYVEAVAAEAEGAEGGATDGEAGVEGGAIDPVEAAEAMDMAQPVPGNPPGT
>Mature_225_residues
MDKQNTIFGWVLFSGIVGLGLAIVSGKYFHADNLEAPENPGYFVAGAAEGGGGAEEMTMAAALNMDGVDVSAGEAVFAKC
TACHTIEQGGANGIGPNLYGIMGKDIASLAGFAYSDALSAKEGAWTWDEMNAWLKSPRGYANGTKMSFAGLSKIEDRAAV
ALYMNSMGSNIPVPEYVEAVAAEAEGAEGGATDGEAGVEGGAIDPVEAAEAMDMAQPVPGNPPGT

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=99, Percent_Identity=38.3838383838384, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=97, Percent_Identity=36.0824742268041, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320796, Length=95, Percent_Identity=44.2105263157895, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322508, Length=97, Percent_Identity=38.1443298969072, Blast_Score=84, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17137228, Length=99, Percent_Identity=43.4343434343434, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI17137204, Length=99, Percent_Identity=42.4242424242424, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22867; Mature: 22867

Theoretical pI: Translated: 3.87; Mature: 3.87

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQNTIFGWVLFSGIVGLGLAIVSGKYFHADNLEAPENPGYFVAGAAEGGGGAEEMTMA
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHH
AALNMDGVDVSAGEAVFAKCTACHTIEQGGANGIGPNLYGIMGKDIASLAGFAYSDALSA
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
KEGAWTWDEMNAWLKSPRGYANGTKMSFAGLSKIEDRAAVALYMNSMGSNIPVPEYVEAV
CCCCCCHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHEEHHCCCCCCCHHHHHHH
AAEAEGAEGGATDGEAGVEGGAIDPVEAAEAMDMAQPVPGNPPGT
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDKQNTIFGWVLFSGIVGLGLAIVSGKYFHADNLEAPENPGYFVAGAAEGGGGAEEMTMA
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHH
AALNMDGVDVSAGEAVFAKCTACHTIEQGGANGIGPNLYGIMGKDIASLAGFAYSDALSA
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
KEGAWTWDEMNAWLKSPRGYANGTKMSFAGLSKIEDRAAVALYMNSMGSNIPVPEYVEAV
CCCCCCHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHEEHHCCCCCCCHHHHHHH
AAEAEGAEGGATDGEAGVEGGAIDPVEAAEAMDMAQPVPGNPPGT
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]