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The map label for this gene is yvdD [H]

Identifier: 85374805

GI number: 85374805

Start: 2008668

End: 2009249

Strand: Direct

Name: yvdD [H]

Synonym: ELI_09890

Alternate gene names: 85374805

Gene position: 2008668-2009249 (Clockwise)

Preceding gene: 85374804

Following gene: 85374806

Centisome position: 65.81

GC content: 61.0

Gene sequence:

>582_bases
ATGAAACGTCTCGCTGTCTATTGCGGCTCTGCCACGCCGGACGACCCGCGCTACATCGAACTCGCGCGCGAAGTCGGCGC
CGGGCTTGCCGAGCGCGATATCGGGGTCGTCTATGGCGGCGGCAAGCTGGGGCTGATGGGCGCGGTCGCCAATGCGGCCA
AGGAAGCGGGCGGCGAAGTGATCGGCGTCATCCCCGAAGCGCTCGTCAATTCCGAAGTCGCCAACCACAATTGCGACGAG
CTGATCACCGTCTCCGGCATGCATGAGCGCAAGCAGAAATTCACCGACCTGTCGGACGGATTCGTCACCATCCCCGGCGG
CGTGGGCACGATGGACGAGCTATGGGAAGCGATGAGCTGGGCGCAGCTCGGCTATCATTCCGATCCGGTAGGCTTGCTCA
ACGCTTTCGGATTCTTCGACGACCTTATCGCCTTTTATGCGAAAATGGCCGAGGTCGGCTTTGTTCGCCCGGCGCACCAG
AACATCCTGATTCATGCGGAGACGCTGCCGGACCTCTTGGCGAAGATGGTCAATTACAAACCGCACACGCCGATTTTCCG
CATGAAGGCCGACGATCTTTGA

Upstream 100 bases:

>100_bases
GCGCAGGTACGCATCCGGGCGCAGGCATTCCCGGCGTCGTCGGCAGCGCGAAAGCCACCGCAGGCTTGATGATCGAGGAT
TTGCTCGCCAAAGCGGCGGC

Downstream 100 bases:

>100_bases
GCGAGCCGGGCAAACCCATAAAGGTGCCGCAACGCCCCCTCGCGCCCTCGCGCATCCTGCGGCCGACGGTGTCGCGCGCG
GGTGGCGGGCGCGACCGGGC

Product: decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKRLAVYCGSATPDDPRYIELAREVGAGLAERDIGVVYGGGKLGLMGAVANAAKEAGGEVIGVIPEALVNSEVANHNCDE
LITVSGMHERKQKFTDLSDGFVTIPGGVGTMDELWEAMSWAQLGYHSDPVGLLNAFGFFDDLIAFYAKMAEVGFVRPAHQ
NILIHAETLPDLLAKMVNYKPHTPIFRMKADDL

Sequences:

>Translated_193_residues
MKRLAVYCGSATPDDPRYIELAREVGAGLAERDIGVVYGGGKLGLMGAVANAAKEAGGEVIGVIPEALVNSEVANHNCDE
LITVSGMHERKQKFTDLSDGFVTIPGGVGTMDELWEAMSWAQLGYHSDPVGLLNAFGFFDDLIAFYAKMAEVGFVRPAHQ
NILIHAETLPDLLAKMVNYKPHTPIFRMKADDL
>Mature_193_residues
MKRLAVYCGSATPDDPRYIELAREVGAGLAERDIGVVYGGGKLGLMGAVANAAKEAGGEVIGVIPEALVNSEVANHNCDE
LITVSGMHERKQKFTDLSDGFVTIPGGVGTMDELWEAMSWAQLGYHSDPVGLLNAFGFFDDLIAFYAKMAEVGFVRPAHQ
NILIHAETLPDLLAKMVNYKPHTPIFRMKADDL

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322406, Length=204, Percent_Identity=34.8039215686275, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005269 [H]

Pfam domain/function: PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 20851; Mature: 20851

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLAVYCGSATPDDPRYIELAREVGAGLAERDIGVVYGGGKLGLMGAVANAAKEAGGEV
CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCE
IGVIPEALVNSEVANHNCDELITVSGMHERKQKFTDLSDGFVTIPGGVGTMDELWEAMSW
EEECHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHH
AQLGYHSDPVGLLNAFGFFDDLIAFYAKMAEVGFVRPAHQNILIHAETLPDLLAKMVNYK
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCC
PHTPIFRMKADDL
CCCCEEEEECCCC
>Mature Secondary Structure
MKRLAVYCGSATPDDPRYIELAREVGAGLAERDIGVVYGGGKLGLMGAVANAAKEAGGEV
CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCE
IGVIPEALVNSEVANHNCDELITVSGMHERKQKFTDLSDGFVTIPGGVGTMDELWEAMSW
EEECHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHH
AQLGYHSDPVGLLNAFGFFDDLIAFYAKMAEVGFVRPAHQNILIHAETLPDLLAKMVNYK
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCC
PHTPIFRMKADDL
CCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]